LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g05683	ATGACAAGGGGTAACGAGATATGTGTTGATGGTGACAGTAAAGAACTTACTCAGTGTTTGTGGGATGGGAAAAACAGCTTAAAAAAAGGAGTTGCAGGTGAGGGTGATGAAGTGGAATGTAATGGAGTAGCTGAAGAAGTTAAGGTTGGAGAGGGAGGGAATGGAGAATCCTCTTCTGTCCAGCAGCAAGTACCGCAGTATCAGTCTCAAGGCGCAGTTATTTGTTGGGAGAGGTTTTTGCATATTAGATCCCTTAAAGTCTTGCTTGTGGAGTATGATGATTGTACCCGCCATATTGTCACTGCATTGCTTTGCAATTGCAGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACCAATCATATTGATATTATTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGCTCTTCTATACAAGATTATGGGCCACACAACTCGGAAAAATGTTCCAGTGATTATGATGTCATCTCACGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTCGATTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAATCTGTGAAATCAAAGAGTCTTGAGAAGTTTGACAACAATTCGGGAAGCAATGACGAGCAAGATAATGAAATTTTAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCTAAATCAGACTCTCAGTGGGAACAGATAGCTGAGTGTCCTGACAGCACTTGTGCTCAAGTTGTTCATTCCAATACTGAAATATGCAGGGGCAAGATGGTTCCTCCAGTCATAAAGGAGTGTCCAGAGCAAAAGGAACAAATAGTTGCAGGTTCAAAACATATCAACACACTTGATGTAGGCCCCTCTAAATTCAATGAGCAAATTATTAGAGGACATCAGGAGCTTAATTGTGAGAATCAATCTGGCAAGCTAAGATGCAAAGGGCTTTCATTATCTGATGGTGTTACTAGCACTTCTGATTCTCGAATGCGAAGTGGAGAAATTGAAGCTCTAAATAGAATACCCAAGTCCTCAGATATTTACAACAAAGGTACTAATAATGACGAGGAGTTGCCATCTCTTGAGCTCAGTTTAAAGAGGCCCAGAGAAGTTAAAGAAGTTGGTACTACAAGTCAGGATGAAAGGAATGTTTTAAGACATTCTGATCTGTCTGCTTTCTCAAAGTACAATGCAGCCCTTAATGCTAAGAAGTCTCCTACGAGATGTGTTGGAAGTAACTCTCCACATAATAACAGCTTAGAAGTTACAAAGAAAGATTCCTCTCTTGATGTTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGGTGGTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCATTTACCAAGTCTGCAGTTATAAGTGAGCCAGCGGTGGCATCAACAACCAAATTTGCGTACAAAACATCTGCTTTCCAGCCCATAAAGAGCAGCCTCATGTATACCTCTCAACAGGATTTTCATCACCATTATGAAAACCACAACAATGTTGCAAACATGCAGCATCAGTTGCCACCTGAGAATGATGCTGAATCATTTAAAAAAATGACGGCTGTTTCTCCACACTGCGGTGGGTCATCAATTGTGGTTGAAGTGCTAGTTGAAGGTAATATGGGAAATTACAGTATCAATAGAAGTGCTTCAGGCAGCAACGTTGAAAGTAATGGACAAAATGGGAGCAGCACTGCAATTAATACTGGAGGGACAAACTTAGAAAGCAACAATGGACTAGCTGGGAATAGTGGTAGTGGTGATGCTAGTGGGAATGGAAGTGCCATCAGAATAGATCCAAACAAAAATTCTCGAAGGGAAGCAGCACTAACAAAATTTCGCCAAAAAAGAAAGGAGAGAAAAGAGAAGTGCTTTCATAAACAGGTTCGATATGAGAGCAGGAAGAAATTAGCTGAACAACGACTACGATATCGTGGACAATTTGTGCGAAAGTCTTCAAACAATGATGCCGGTGAGGCAACAGATAGTTGA	2169	0.4108	MTRGNEICVDGDSKELTQCLWDGKNSLKKGVAGEGDEVECNGVAEEVKVGEGGNGESSSVQQQVPQYQSQGAVICWERFLHIRSLKVLLVEYDDCTRHIVTALLCNCSYEVIEAANGLQAWKILEDLTNHIDIILTEVAMPGLSGIALLYKIMGHTTRKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNDEQDNEILGLNNGDGSDNGSGTQSSWTKRAVEVDSPKSDSQWEQIAECPDSTCAQVVHSNTEICRGKMVPPVIKECPEQKEQIVAGSKHINTLDVGPSKFNEQIIRGHQELNCENQSGKLRCKGLSLSDGVTSTSDSRMRSGEIEALNRIPKSSDIYNKGTNNDEELPSLELSLKRPREVKEVGTTSQDERNVLRHSDLSAFSKYNAALNAKKSPTRCVGSNSPHNNSLEVTKKDSSLDVQSHSSGNPPNQNSNGGSNNIDMGSTTNNAFTKSAVISEPAVASTTKFAYKTSAFQPIKSSLMYTSQQDFHHHYENHNNVANMQHQLPPENDAESFKKMTAVSPHCGGSSIVVEVLVEGNMGNYSINRSASGSNVESNGQNGSSTAINTGGTNLESNNGLAGNSGSGDASGNGSAIRIDPNKNSRREAALTKFRQKRKERKEKCFHKQVRYESRKKLAEQRLRYRGQFVRKSSNNDAGEATDS	722

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi1g05683	722	MobiDBLite	consensus disorder prediction	240	282	-	-
Vivi1g05683	722	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	85	378	IPR045279	GO:0009736
Vivi1g05683	722	ProSiteProfiles	CCT domain profile.	668	710	IPR010402	GO:0005515
Vivi1g05683	722	MobiDBLite	consensus disorder prediction	453	505	-	-
Vivi1g05683	722	FunFam	Two-component response regulator-like PRR37	85	243	-	-
Vivi1g05683	722	Gene3D	-	84	256	-	-
Vivi1g05683	722	MobiDBLite	consensus disorder prediction	609	658	-	-
Vivi1g05683	722	SMART	REC_2	85	200	IPR001789	GO:0000160
Vivi1g05683	722	ProSiteProfiles	Response regulatory domain profile.	86	204	IPR001789	GO:0000160
Vivi1g05683	722	SUPERFAMILY	CheY-like	83	209	IPR011006	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g05683	Vivi-Chr1	125257965	125277584	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g05683	163	712	Response Regulator Gene Family	AT5G02810	46.812	6.07e-107	336

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Vivi1g05683		Response_reg	3.5e-20	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g05683	K12129		-	gmx:100796933	1004.97

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