Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi1g05671 | ATGGATAACCAAAATGACAAAAATATCCCTCTATGTTATTTCTTTGTCTTTTTGTTTTTCTCCGGTGTCCACTTCCCCTTCGCCGGAGCACAGTCAGTCAACGGTAACACAAACGGTAACGCAAACGACAACAACTATTACAACCGTGTAAGCCCCTCCATGGCGATAATTATCGTGATACTCATCGCAGCTCTCTTTCTGATGGGATTCTTCTCAATCTACATCCGTCAATGCGCTGATTCACCTTCCAACAGCATCCGCAACATGGCTGGTGTCACAGGACGATCACGACGCGCGGCGCGTGGTCTTGATGCTTCCGTGCTTGAAACGTTTCCGATTTTCGAATACTCGTTCGTGAAGATTCACAAAATCGGAAAAGGGACTCTAGAATGTGCTGTGTGTTTGAACGAGTTTGAAGAAACTGAAACGCTGCGTTTGATTCCGAAGTGTGATCATGTTTTTCACCCTGAGTGTATTGATGAGTGGCTCGGTTCACATACGACTTGCCCGGTTTGCAGAGCGAACTTGGTTCCTCAACCGGGTGAATCGGTTCACGGAATCCCGTTGTTTAATACAGAACAACAAGATATCGAGGCTCAAAACGACGTAGTTGAATCGGTTCATGAACATCAAAATATGGATGGTTCTGTTAAAGAGTCAACCGAACCGGAAGTGTTGACCGTGAACGAGACGCTGAACCGGAACCGTACGAGAGGCTCCCGGTCTGGAAGGCCTCGTTGGTTTCCGCGGTCTCATTCGACCGGTCATTCTTTGGTTCAACCGGGTGAGAATACTGAGCGGTTTACTTTGAGGTTGCCTTTGGAAATGAGGAAACAGATATTACAGAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGTTGCCGAGAGAAACTAGTTCACGGAGGGGATATCGGACCGGTGGTGGGGAGGGGAGTAGCAGAGGGAAGTCTGTAAGGTGGTTGGACCGGGGTTTTAAATCGGACCGGTGGGTTTTTACTATGGCGCCTCCTTTTCTTGTGAGAGCGTCGTCGATTAGGTCACCGAGGGTGGCTAATAGCGCTGGGGAAGGTACTTCTGCTTCAGCAGCTACGACGGCGGCGGCTGTTGACTCGCCGCGCCCTCCGGTTTGA | 1134 | 0.4956 | MDNQNDKNIPLCYFFVFLFFSGVHFPFAGAQSVNGNTNGNANDNNYYNRVSPSMAIIIVILIAALFLMGFFSIYIRQCADSPSNSIRNMAGVTGRSRRAARGLDASVLETFPIFEYSFVKIHKIGKGTLECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPLFNTEQQDIEAQNDVVESVHEHQNMDGSVKESTEPEVLTVNETLNRNRTRGSRSGRPRWFPRSHSTGHSLVQPGENTERFTLRLPLEMRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRWLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSAGEGTSASAATTAAAVDSPRPPV | 377 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi1g05671 | 377 | CDD | RING-H2_EL5-like | 130 | 173 | - | - | |
Vivi1g05671 | 377 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 178 | IPR013083 | - | |
Vivi1g05671 | 377 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 38 | 235 | - | - | |
Vivi1g05671 | 377 | MobiDBLite | consensus disorder prediction | 351 | 367 | - | - | |
Vivi1g05671 | 377 | MobiDBLite | consensus disorder prediction | 351 | 377 | - | - | |
Vivi1g05671 | 377 | MobiDBLite | consensus disorder prediction | 235 | 261 | - | - | |
Vivi1g05671 | 377 | SMART | ring_2 | 131 | 172 | IPR001841 | - | |
Vivi1g05671 | 377 | SUPERFAMILY | RING/U-box | 126 | 180 | - | - | |
Vivi1g05671 | 377 | Pfam | Ring finger domain | 130 | 173 | IPR001841 | - | |
Vivi1g05671 | 377 | ProSiteProfiles | Zinc finger RING-type profile. | 131 | 173 | IPR001841 | - | |
Vivi1g05671 | 377 | FunFam | E3 ubiquitin-protein ligase ATL6 | 92 | 179 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi1g05671 | Vivi-Chr1 | 124791642 | 124793834 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi1g05671 | 27 | 374 | Rapid Response to Elicitors | AT3G05200 | 47.592 | 2.01e-90 | 276 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi1g05671 | K10664 | - | gmx:100810865 | 473.396 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi1g05671 | 1 | 124791642 | 124793834 | Vivi1g05671 | 1 | 124791642 | 124793834 | ECH | |
Vivi6g04990 | 6 | 153902158 | 153903680 | Vivi1g05671 | 1 | 124791642 | 124793834 | PCT |