Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05671 ATGGATAACCAAAATGACAAAAATATCCCTCTATGTTATTTCTTTGTCTTTTTGTTTTTCTCCGGTGTCCACTTCCCCTTCGCCGGAGCACAGTCAGTCAACGGTAACACAAACGGTAACGCAAACGACAACAACTATTACAACCGTGTAAGCCCCTCCATGGCGATAATTATCGTGATACTCATCGCAGCTCTCTTTCTGATGGGATTCTTCTCAATCTACATCCGTCAATGCGCTGATTCACCTTCCAACAGCATCCGCAACATGGCTGGTGTCACAGGACGATCACGACGCGCGGCGCGTGGTCTTGATGCTTCCGTGCTTGAAACGTTTCCGATTTTCGAATACTCGTTCGTGAAGATTCACAAAATCGGAAAAGGGACTCTAGAATGTGCTGTGTGTTTGAACGAGTTTGAAGAAACTGAAACGCTGCGTTTGATTCCGAAGTGTGATCATGTTTTTCACCCTGAGTGTATTGATGAGTGGCTCGGTTCACATACGACTTGCCCGGTTTGCAGAGCGAACTTGGTTCCTCAACCGGGTGAATCGGTTCACGGAATCCCGTTGTTTAATACAGAACAACAAGATATCGAGGCTCAAAACGACGTAGTTGAATCGGTTCATGAACATCAAAATATGGATGGTTCTGTTAAAGAGTCAACCGAACCGGAAGTGTTGACCGTGAACGAGACGCTGAACCGGAACCGTACGAGAGGCTCCCGGTCTGGAAGGCCTCGTTGGTTTCCGCGGTCTCATTCGACCGGTCATTCTTTGGTTCAACCGGGTGAGAATACTGAGCGGTTTACTTTGAGGTTGCCTTTGGAAATGAGGAAACAGATATTACAGAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGTTGCCGAGAGAAACTAGTTCACGGAGGGGATATCGGACCGGTGGTGGGGAGGGGAGTAGCAGAGGGAAGTCTGTAAGGTGGTTGGACCGGGGTTTTAAATCGGACCGGTGGGTTTTTACTATGGCGCCTCCTTTTCTTGTGAGAGCGTCGTCGATTAGGTCACCGAGGGTGGCTAATAGCGCTGGGGAAGGTACTTCTGCTTCAGCAGCTACGACGGCGGCGGCTGTTGACTCGCCGCGCCCTCCGGTTTGA 1134 0.4956 MDNQNDKNIPLCYFFVFLFFSGVHFPFAGAQSVNGNTNGNANDNNYYNRVSPSMAIIIVILIAALFLMGFFSIYIRQCADSPSNSIRNMAGVTGRSRRAARGLDASVLETFPIFEYSFVKIHKIGKGTLECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPLFNTEQQDIEAQNDVVESVHEHQNMDGSVKESTEPEVLTVNETLNRNRTRGSRSGRPRWFPRSHSTGHSLVQPGENTERFTLRLPLEMRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRWLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSAGEGTSASAATTAAAVDSPRPPV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05671 377 CDD RING-H2_EL5-like 130 173 - -
Vivi1g05671 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 178 IPR013083 -
Vivi1g05671 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 235 - -
Vivi1g05671 377 MobiDBLite consensus disorder prediction 351 367 - -
Vivi1g05671 377 MobiDBLite consensus disorder prediction 351 377 - -
Vivi1g05671 377 MobiDBLite consensus disorder prediction 235 261 - -
Vivi1g05671 377 SMART ring_2 131 172 IPR001841 -
Vivi1g05671 377 SUPERFAMILY RING/U-box 126 180 - -
Vivi1g05671 377 Pfam Ring finger domain 130 173 IPR001841 -
Vivi1g05671 377 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Vivi1g05671 377 FunFam E3 ubiquitin-protein ligase ATL6 92 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05671 Vivi-Chr1 124791642 124793834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05671 27 374 Rapid Response to Elicitors AT3G05200 47.592 2.01e-90 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05671 1 124791642 124793834 Vivi1g05671 1 124791642 124793834 ECH
Vivi6g04990 6 153902158 153903680 Vivi1g05671 1 124791642 124793834 PCT