Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05666 ATGGATCATCAAGGTCATGGCCAAAACCCTGCTATGGGAGTTGTTGGTAGTGGACAAATGGCTCCATATGGTTCTAATCCATATCAGCCCAACCATATAGCTGGGTCACCTGGGATGGTTGTTCCCTCTGTTGGGAATATTCAGCCTGGTGTTCAACCCGACGGAACTCAGATGGGACAACATCAGCTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAGCAACAGCAACAACTCCAGACCTTTTGGGGAACTCAATATCAAGAAATCGAGAAGGTGACTGATTTCAAAAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAAGATGTGAAGATGATATCAGCTGAGGCCCCGGTTGTATTTGCAAGGGCATGCGAAATGTTCATTCTAGAGTTAACCTTGCGTTCTTGGACTCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGATATTGCCGCAGCCATCACTGGAACTGATATCTTTGATTTCTTGGTTGATATTGTCCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGGCCAATGCCTGTTGGAGGGCCTGCTGATGGAATTCCTTATGGCTATATGCCACCTCATCACGCACAGCAAGCTGGAAATCCTGGTCTCATGATGCATAATCCGAACATGTATGCTCCACAGTCTCATCCATACATGGCACCTCAAATGTGGCCTCAACCACCTGAGCAACCACCGTCGCCTTCAGATCATTAG 771 0.4643 MDHQGHGQNPAMGVVGSGQMAPYGSNPYQPNHIAGSPGMVVPSVGNIQPGVQPDGTQMGQHQLAYQHIHQQQQQQQQQQLQTFWGTQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWTHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYGYMPPHHAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPPEQPPSPSDH 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05666 256 MobiDBLite consensus disorder prediction 233 256 - -
Vivi1g05666 256 MobiDBLite consensus disorder prediction 239 256 - -
Vivi1g05666 256 SUPERFAMILY Histone-fold 69 173 IPR009072 GO:0046982
Vivi1g05666 256 FunFam Nuclear transcription factor Y subunit gamma 67 179 - -
Vivi1g05666 256 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Vivi1g05666 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 67 202 - -
Vivi1g05666 256 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05666 Vivi-Chr1 124552028 124554149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05666 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.525 1.42e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi1g05666 Histone 4.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05666 K08066 - gmx:100527803 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05666 1 124552028 124554149 Vivi1g05666 1 124552028 124554149 ECH
Vivi6g04978 6 153774592 153777281 Vivi1g05666 1 124552028 124554149 ECH
Vivi6g04978 6 153774592 153777281 Vivi1g05666 1 124552028 124554149 PCT