Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05643 ATGGCACCACCAAGGAAATCTAGAAGTGTGAATAAGCGGTTTACAAATACAAATGATATTTCTCCTGAGAAAGATGGAGTTGGATCAAGTAAAAACAAGCACAGGAAGAAGAAATTGTCTAATAAATTAGGATCTCAGTGGAGCAAGGAGGAACTTGAGCGATTCTATGAAGCATACAGAAAGTATGGGACAGATTGGAAGAAGGTGGCTGCTGCTGTCCGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGCATGGCTTCTGTTGTGGGCCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGATAGTGAAAAGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGGAAGCGTGAAAAAGTTCAGCTTAGTGTTTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCAGTGATGGTTGCCTCTCTCTACTGAAGAAAAGGCGCATTGATGGTATCCAGCCTCGTGCAGTTGGGAAGAGGACACCCCGAGTTCCAGTTTACCACTCTTACAAGAAAGATGATAGGGAGAATTTTGTTTCACCTAATAAAAGAAGTTTGAAGTCCACTGCTGATGCTAATGATGATGAAGTTGAACATGTAGCTTTGACATTAACCAGGGCTTCACAAAGAGGAGACTCTCCCCGTTCTCAAACACCACATAGGAGAGCAGGGCAGAAGTCCTCTGTTGTTCAGAGCCGAGAAAAAATGCAGCAAGTATCACAAACGACTCGTGCTAAGTTTCACAATGTTCCTGTGGATGAAGAGTTTGTGGAAGGTAGTCTAGAAAGCAGGGGAGCTGAAAATGGAGAATATGCTAGAGATACTAGTTCCTTGATAGATATGGAAGGAACGAGCACCGCTGGAGTTCTTCTGAAGAAAGGTAAATTTTATAGAAAAAAAGAGAAAGTGGAAAATATTGGAAATGATCAGCTTGATGATGGAGGAGAAGCATGCAGCGGCACTGAAGAAGGACTTAGTTTTAGGTCTTTGAAAGAAAATAAATTGGAGGGTACTAATGAAAGACTTGAGCAATTCTCTCCAACAAGTCAGCGGAAAAAAAGCCAGAAGCTCTTTTTTGGAGATGAAATCCACGCCTTGAATGCTTTGCAAACTTTGGCCGATCTATCTCTAATGATGCCGACATCTAAAGCAGAATCTGAATCACCAGTCCAGTTGAAGGGAGAAAGAAAGACTCTTGTTAAAGATGATAAGTCTGCTTTACCTGAAGCAACTTCAACAAGTCATAAGAGAAATAAAGTTAGACTCCGTGGGGTCTCTGTAGCCGACACTTCAACGTCCAAAAAATCTAAACTCGGAAAGGATATAGCAAATGATACCAATGCTCTTTCTGAATCAAAAGAGCAGATTCCGTTTGCTGATAAAACATGGAAAAGAAAGCAGAAGTCCACTCTTTCAAAGGTTGTGGATGATGGGAACAAAATGGCGATTAAAGGAAAACACGCTGATCAGGTTTTTGCCTCACCAAAACAATTGAAGATGGTCAAACCATCAGAAGTTGTCTCGCGTGGTGATCAGAAAGGTTTAGCAATATCAACCGCTGAAATTCCACTTTTGAATGAAATTAGTTCACCAATCAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCCAAAAGAGAAGTCTTCTGAGAATATATTGAAAAACCAACCTAATAATTACTCTACCCAAAAGGAAAAGCTTTCCAGTTGCCTGTCATCTTCTTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTGGGGCTGGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCACGCAGGTTTTCTGAACACTTTTTACATGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCAGTGAGGAAACATTATTCTGAGCTGCGGACTGGTGTCAGAGATGGACTTCCGACAGATTTAGCGAGACCATTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGGTTCATGATGGTAGTGTGCTTACTGTTGACCATGACAAGTGCAGGATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATCGATTGCATGCCTTTGAATCCATTAGATAATATGCCAGAAGCTTCGAGGAGGCAGATTGGTGCCAGAAAAACCTCTTTTATAACTAAAGAGCCGCAGATTAATGGAAATTCAAGTGTTGGGGGATGTGAAATGCATTCCTCACCTGTGAAGGCGGATGCTAACCATGTCACTTCCCAGACCAATATTGATAACCTCTGCGCTCAAGCTGCTTGTGCTCAACCGTCTCAAGTGATGCAACATCAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACAGTGCTAATAGAACTTCGAAATGCAAATAATGGCATATTGGAAAACCAAAATGGTATAGAATGTTTAAAAGATCCCGAAGGTTTCAAGAAGCATTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATACCATGCTTCAATTGAGGCAACGCAACACCTACACGGACAACTCTTTCCCACCATGGATGAAGCCCAAAGCTGATATTGAAGTTCATGATGATCTTCCCAGTGTGTTGGATAATTCTATGACACAAGAGTCTAGGTCGACTGTCATTGAAATTGTTAAAGGATCTAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCCACAAAGGAAGGTAAAGATGCTATTACGAAGATTGGACAGGCATTGGATTCTATTGATTATCAACAGTTATCCTCTAAGTACAGGTTGCCTGTGATAAGGTCTCAAGATCAAGTGAATGGCAGTTTTTATCAGCATAATCAATCAACTTGCAAAGTATCTGAACCTTTACTTAATGATGCATCTGGTCCCAAACTGCATAAAGATTCTGACGAAGTTGATTTTGAAATACCGTCAGAGCTCATCACTTCATGTGTTGCTACATTAACCATGATACAGAGTTGTACAGAACGGCAATACCCTCCAGCAGATGTGGCACGAATATTAGATTCTGCTGTTACCAGCTTGCAACCATGCGATCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAG 3345 0.4138 MAPPRKSRSVNKRFTNTNDISPEKDGVGSSKNKHRKKKLSNKLGSQWSKEELERFYEAYRKYGTDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGMASVVGLIAMMTDHYNVLEESDSEKESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSVTSSDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKKDDRENFVSPNKRSLKSTADANDDEVEHVALTLTRASQRGDSPRSQTPHRRAGQKSSVVQSREKMQQVSQTTRAKFHNVPVDEEFVEGSLESRGAENGEYARDTSSLIDMEGTSTAGVLLKKGKFYRKKEKVENIGNDQLDDGGEACSGTEEGLSFRSLKENKLEGTNERLEQFSPTSQRKKSQKLFFGDEIHALNALQTLADLSLMMPTSKAESESPVQLKGERKTLVKDDKSALPEATSTSHKRNKVRLRGVSVADTSTSKKSKLGKDIANDTNALSESKEQIPFADKTWKRKQKSTLSKVVDDGNKMAIKGKHADQVFASPKQLKMVKPSEVVSRGDQKGLAISTAEIPLLNEISSPIKQRSRRKMIFQRPSMPKEKSSENILKNQPNNYSTQKEKLSSCLSSSLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYSELRTGVRDGLPTDLARPLYVGQRVIAIHPKTREVHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPLNPLDNMPEASRRQIGARKTSFITKEPQINGNSSVGGCEMHSSPVKADANHVTSQTNIDNLCAQAACAQPSQVMQHQAKEADIHALSELKRALDKKETVLIELRNANNGILENQNGIECLKDPEGFKKHYATVLVELKEASGQVSDTMLQLRQRNTYTDNSFPPWMKPKADIEVHDDLPSVLDNSMTQESRSTVIEIVKGSRLRAHAMLDAAFQAWSQATKEGKDAITKIGQALDSIDYQQLSSKYRLPVIRSQDQVNGSFYQHNQSTCKVSEPLLNDASGPKLHKDSDEVDFEIPSELITSCVATLTMIQSCTERQYPPADVARILDSAVTSLQPCDPRNLPIYREIQMCMGRIKTQILALIPT 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05643 1114 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Vivi1g05643 1114 Gene3D - 5 100 - -
Vivi1g05643 1114 PANTHER LIN-9 1 1114 IPR010561 GO:0006351|GO:0017053
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 9 25 - -
Vivi1g05643 1114 Pfam DIRP 609 710 IPR033471 -
Vivi1g05643 1114 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 77 IPR017930 -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 145 159 - -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 116 159 - -
Vivi1g05643 1114 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 1 44 - -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 116 144 - -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 194 265 - -
Vivi1g05643 1114 SMART sant 43 91 IPR001005 -
Vivi1g05643 1114 SMART DIRP_2 610 711 IPR033471 -
Vivi1g05643 1114 Coils Coil 835 855 - -
Vivi1g05643 1114 Coils Coil 662 682 - -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 410 437 - -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 227 265 - -
Vivi1g05643 1114 ProSiteProfiles Myb-like domain profile. 45 77 IPR001005 -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 403 437 - -
Vivi1g05643 1114 CDD SANT 47 81 IPR001005 -
Vivi1g05643 1114 MobiDBLite consensus disorder prediction 279 298 - -
Vivi1g05643 1114 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05643 Vivi-Chr1 124077027 124088785 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g05643 DIRP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05643 - - gmx:100816217 1591.63