Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05639 ATGGCTGATTTTCAGACATCTACCCACCGAGCCAGGTGGATCTTTACTCCACAACAACTGGTTGAGAAATATACAGCTGCTAATCAGAGAGCCAGACAAACCCTAGAGAAGTGTGGAGCAAGTCTAATGGAAGTAGATAGTAATGGGTCTTTGTCATATCCTGAACCCCAGACGACCGCAAGCGATAGTGCTGAAAAACATTCTCGGGTAAAACCTCTTAGTAATGAAGAAGAACGGTGTATGAAGGTATTTTATGAAATCAAGCTACAAGAAGTGTGCAACAATTTCCACTTCCCTCATAAGATCCAGGCTACAGCCCTCATATTTTTTAAAAGGTTCTATCTGCAATGGTCGGTGATGGAACATCAACCAAAAAATATAATGTTGACCTGCATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCTGCTGAGGAGCTTGGTAAGGGGATTTCGCAAGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTCTGGATTTTGATCTTATAGTTTATGCTCCATATCGCTCGGTTGAAGGTTTTACAGATTATATGGAGGAATTTTGCAATGCTGGCGAGGATGAGCTTCCAAAATTCAAGGCTTTGCAAGATACGGCAGGGCGGGAAGTTGATAAAATGATGCTTACAGATGCACCACTCTTATTTACTCCTGGGCAGTTGGCCTTGGCCGCTCTACGTACCTCAAATGCACTCCATAAAGTTGTCGACTTTGATAGTTTTCTGAGCAGAGTTTTTTCCCTTAAGAATTCTACACACACAATGGACGAACTTCTTGAATCATTGGATGCAATTGATTCTTGGGTTAGAAAATACGTTAGTCCTTCAGAGAAGGAATTGAAGCATATTGACCGGAAAGTAAAGTCTTGTTGGGGTCATAGCTCTCATGACGAGGGAAAGAAGAGGGAGAAGAAATCAAAGCACAAGTCCAGAAAGAGCTCAAAAGAAGCACAAAATGTGTAG 996 0.4086 MADFQTSTHRARWIFTPQQLVEKYTAANQRARQTLEKCGASLMEVDSNGSLSYPEPQTTASDSAEKHSRVKPLSNEEERCMKVFYEIKLQEVCNNFHFPHKIQATALIFFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLDFDLIVYAPYRSVEGFTDYMEEFCNAGEDELPKFKALQDTAGREVDKMMLTDAPLLFTPGQLALAALRTSNALHKVVDFDSFLSRVFSLKNSTHTMDELLESLDAIDSWVRKYVSPSEKELKHIDRKVKSCWGHSSHDEGKKREKKSKHKSRKSSKEAQNV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05639 331 CDD CYCLIN_AcCycH_rpt1 3 174 - -
Vivi1g05639 331 MobiDBLite consensus disorder prediction 47 72 - -
Vivi1g05639 331 SUPERFAMILY Cyclin-like 66 176 IPR036915 -
Vivi1g05639 331 FunFam Cyclin h 177 282 - -
Vivi1g05639 331 Gene3D - 63 175 - -
Vivi1g05639 331 SMART cyclin_7 87 168 IPR013763 -
Vivi1g05639 331 SUPERFAMILY Cyclin-like 179 305 IPR036915 -
Vivi1g05639 331 MobiDBLite consensus disorder prediction 47 61 - -
Vivi1g05639 331 FunFam cyclin-H1-1 63 175 - -
Vivi1g05639 331 Pfam Cyclin C-terminal domain 179 275 IPR031658 -
Vivi1g05639 331 MobiDBLite consensus disorder prediction 302 331 - -
Vivi1g05639 331 Pfam Cyclin, N-terminal domain 70 174 IPR006671 -
Vivi1g05639 331 PANTHER CYCLIN 31 324 IPR043198 GO:0006357|GO:0016538
Vivi1g05639 331 CDD CYCLIN_AcCycH_rpt2 177 304 - -
Vivi1g05639 331 Gene3D - 177 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05639 Vivi-Chr1 124012611 124017494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05639 1 280 Core Cell Cycle Gene Families AT5G27620 63.929 2.23e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05639 K06634 - gmx:547736 551.206