Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05632 ATGTCAAACATCACAAGTTGTGATAGTGGTAGCTTCTCTACAGAGAATACCAGAGATCAAGATGGAGTTAAACATCATCAACAACAAAATGAAATTCTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACTACTACTACAACAAATAATAGCAATGGTTCCAACTCTAATTTACAACCACCTCTTAAGAGAAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTTTATCACCAACAACACTAATGGCTACAAACAGATTCGTATGTGAAATATGCAACAAAGGTTTTCAAAGAGATCAAAATCTTCAACTGCACCGAAGAGGACACAACTTGCCATGGAAGCTTAAGCAGAGAACAACTAGTGAGATTATAAAGAAGGTTTATGTTTGTCCTGAACCTTCCTGTGTTCACCATAACCCTGCAAGAGCACTTGGTGATCTTACTGGTATTAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCTAGAAGAGACAGCTTCATTACCCACAGAGCTTTCTGTGATGCATTAGCTGAAGAGAACAACAAAGCCAACGAAGGCTCAGTACAATTATCAAACATGCAACAGCACCAACAAATTCCAAATCTTGTTTCTTCAATATTACCAATGAACCAAAACAACTCACAAATTGTTGGAGCTTCAGAGTTCAACCTTTCAGATCACAAACATCCACTATCATCACCTCACGATCTCATGTCAGTTCCTGTGAAACCCTTCAACAGCAATATATTCACTAGAAGTCTTTCATCGTCAACTTCATCTCCTTCTCTTCAACTGAGTTCAAATAACTCACTCAACAACATCTTGGAAGAAAACGGATCACTCCATTTATCTCCAGCTGCAACCTCACCTCACATGTCAGCTACTGCATTGTTACAAAAAGCTGCTCAAATGGGTGCAACCGTGAGTAATAGCAACACAGGTATGATTATGACAGATAAAACAACCGTTGCTACAAACATGATGGCTCCACCGCTGTTCGGTGTGGTGCAACAACAAGGACATTCTTTCATGAATCACTACATGCAACAGCAACAGCAACAACCTCAGTATATTAATAATAATTTCAATGCAAATGGGATGATAACCGGAGGAGGTGTTAATGGTTCGATGAATGGAGTTGACATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCCAAGATCATTGAACAGAACAATCAAACTCAAAGCATGAACAGTGTTGTAGGAGGAGGTGCATCAAGTAATAATATTATGAATATTGGTGGAAGTAAAGGAAGTGGTGGGGGAGATGTAATGACACTGGATTTGTTGGGGATAGGAGGAGGGGGTGCACACGGTAATTTCTATGGAGGGGGTGCACACGGTACACAACAACAACAGCAACAAGCAGAAAGTGCTGCAGCAGCAGTAGCAGCAGATGAGGTTTGGAGAAATTGGTCAACCAAGAATGGAGGGTTTGAAACCTTTTCAGCAACCAGCAACATTTGA 1626 0.3973 MSNITSCDSGSFSTENTRDQDGVKHHQQQNEILGQFHSPHSHTSTTTTTNNSNGSNSNLQPPLKRKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTSEIIKKVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGSVQLSNMQQHQQIPNLVSSILPMNQNNSQIVGASEFNLSDHKHPLSSPHDLMSVPVKPFNSNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSPAATSPHMSATALLQKAAQMGATVSNSNTGMIMTDKTTVATNMMAPPLFGVVQQQGHSFMNHYMQQQQQQPQYINNNFNANGMITGGGVNGSMNGVDMFNAILDQSKALSKIIEQNNQTQSMNSVVGGGASSNNIMNIGGSKGSGGGDVMTLDLLGIGGGGAHGNFYGGGAHGTQQQQQQAESAAAAVAADEVWRNWSTKNGGFETFSATSNI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05632 541 MobiDBLite consensus disorder prediction 1 17 - -
Vivi1g05632 541 FunFam protein indeterminate-domain 5, chloroplastic-like 147 226 - -
Vivi1g05632 541 FunFam protein indeterminate-domain 12-like 72 140 - -
Vivi1g05632 541 Gene3D Classic Zinc Finger 135 217 - -
Vivi1g05632 541 Gene3D Classic Zinc Finger 93 134 - -
Vivi1g05632 541 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Vivi1g05632 541 SMART c2h2final6 93 115 IPR013087 -
Vivi1g05632 541 SMART c2h2final6 134 164 IPR013087 -
Vivi1g05632 541 SMART c2h2final6 169 189 IPR013087 -
Vivi1g05632 541 MobiDBLite consensus disorder prediction 27 63 - -
Vivi1g05632 541 MobiDBLite consensus disorder prediction 1 77 - -
Vivi1g05632 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Vivi1g05632 541 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vivi1g05632 541 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 507 IPR031140 -
Vivi1g05632 541 Pfam Zinc finger, C2H2 type 93 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05632 Vivi-Chr1 123838815 123842350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05632 64 374 IDZ Gene Family AT3G50700 55.263 5.98e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g05632 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05632 - - gmx:100785295 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05632 1 123838815 123842350 Vivi1g05632 1 123838815 123842350 ECH
Vivi1g05632 1 123838815 123842350 Vivi1g05632 1 123838815 123842350 PCT