Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05630 ATGGATCACGCGAGATCGAACAACATCGATGAGAATGTAGGAATTCCAGACGATTTGCGTTGCAAGAGGTCGGACGGGAAACAATGGAGGTGCACGGCGATGTCGATGCCGGATAAGACAGTTTGCGAGAAGCATTACATTCAGGCGAAGAAAAGAGCGGCGAATTCCGCCATGAGAGCTAATCTCAAGAAAGCGAAAACGTATCCTGACTCTGATGTTTATTTGGAGAGCAAGAGTGATGATTTTGATGCTCCTCTTTCTACTGCATTTAATACTAACCGTTCTGCTTCATCTGGGAAGAAGCTATTTGATAAGGTTTCGAAGAATCAGTTTCGATATACTCCTGAGGGTGCTGACACTACAAGGGGCTCTTCTTCCCGTCGTGATTCGAAGCTTGGTGAGGGTGATGATTCCCCTGATCATGCTGATGACGATGACGAGGATGCTGTTCCCTACGAAGAGAATTGGATCTCTAATGATTCGCCACCTGCTTCGGGTGATGAATCTGCAGGGAAAATGCCGCACGAGAGTCTTGATGCCAATGCTACTACTGAGTCTGATGGAACCTCGGATTCTTCTCAAGAGACTGGCGGGCAGACTTGTCATCAGTGCAGGAAGAATGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGGAGAGGATATTGTGATAGCTGTATATCAACTTTGTATTCTAACATTTCGTTGGATGAAGTTCAGAGGCTATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGCTTACGCAATGATAATTCAATTAAGGTTCGGATACGTGAGATACCTGTAATGGATAAGTTACAGTATCTTCACTTGTTGCTCTCATCGGTGCTTCCCGTGGTAAAGCAGATTCACCATGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAATTGAATGCTGATGAGCAGATGTGCTGCAATTTATGCAGGATACCTATCACTGATTATCACCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGCCGAGACCTTCGGGAAGCTACTGTACATCAAAGTAACGAACCTCAAACAGAGCAAGCAAGAACTACTGATCAAAACATATTGAGCAAGTTTCCTCACTGGAGATCCAATGACAATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATGCATCCTTAAATTTAAGTCGGATTTTCAAGATGAACTGGGTTGCAAAATTAATAAAAAATGTAGAAGAAATGGTTAGTGGATGTAAAATGAGTGATGCTGATAGTCCACTAAATACAGGATTGAATACTCTCAAACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGTCCAACATCGGAAGATCTCAAAACTGATGGGATTGGCATGTTTAGAATGCACTGGAAAACTGGTGAGCCCATTATCGTTAAGCAAGTATTTGATAGGTCATCAATTTCAAGCTGGGACCCATTGGTCATATGGAGAGGGATTCTAGAGACTACAGATGCGAATATGAAAGATGATAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGGTTGATATTGAGCTTAGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAGATATTGAAGCTGAAAGATTGGCCTTCACCTAGAGTATCTGAAGAATTTCTTTTGTACCAAAGACCTGAATTTATCAGCAAGCTGCCTCTACTTCAGTATATTCACTCGAAGTGGGGCCTCCTTAATGTTGCAGCTAAGTTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATCTATATATCTTACGGGATTAATGGTGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAGTGAAGTGAAGCTGAAGGACTGGCAGAGAACAAAAATTGAAAAGATGCAGAAACCTCATAAGGAGTCTGAGGGGAAAGAATCTTATGGGGATCCACATATATGTTCAAGAGGGAGTTCACCTGATTCAGCCCTTTGTACAAAAATTAATGGACTAGATTTGGAATCAGACCAGAAAGATTCAACCATGGATCAAGGGTATGGAGTTTATTCTAGTGCTGAAGGGAATATGGGCAATTGTGAAATTCCATTAAGACAAAATGGAGTCACCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTTGGGAAGTCAGATGATATAGTTACCTGGCCTCTTTATGGCGGAGCTATTTTTCTTGACAGACTCCATAAAAGAAAGTTGAAGGAAGAATTCGGAGTTGAGCCGTGGTCATTTGAACAGAATTTCGGGGAAGCTGTATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAATCAACTGTTCAATTGGGCCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGGTTGGCAGAGGAAGTTCGCCGTTTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTTGGGAAGATATCTCTCTATGCCGCAAGTTCTGCAATCAAAGAAGTTCAGAAACTTGTGCTTGACCCAAAACTTGGCGGAGAGATTGGATATGGAGACCCTAATTTAACTGCAATGGTTTCAGAGAACTACGAGAAGACGTCTAAGCGTAGGCAGATTACTTGTGCATAA 2805 0.4203 MDHARSNNIDENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKTYPDSDVYLESKSDDFDAPLSTAFNTNRSASSGKKLFDKVSKNQFRYTPEGADTTRGSSSRRDSKLGEGDDSPDHADDDDEDAVPYEENWISNDSPPASGDESAGKMPHESLDANATTESDGTSDSSQETGGQTCHQCRKNVRDRVTWCLKCDRRGYCDSCISTLYSNISLDEVQRLCPACRGICNCKICLRNDNSIKVRIREIPVMDKLQYLHLLLSSVLPVVKQIHHEQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATVHQSNEPQTEQARTTDQNILSKFPHWRSNDNGSVPCPPKEYGGCGYASLNLSRIFKMNWVAKLIKNVEEMVSGCKMSDADSPLNTGLNTLKLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKQVFDRSSISSWDPLVIWRGILETTDANMKDDNRMVKAIDCLDGSEVDIELSQFMKGYSEGRILENGWPQILKLKDWPSPRVSEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGINGELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKIEKMQKPHKESEGKESYGDPHICSRGSSPDSALCTKINGLDLESDQKDSTMDQGYGVYSSAEGNMGNCEIPLRQNGVTSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVTWPLYGGAIFLDRLHKRKLKEEFGVEPWSFEQNFGEAVFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKTSKRRQITCA 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05630 934 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Vivi1g05630 934 MobiDBLite consensus disorder prediction 108 200 - -
Vivi1g05630 934 Pfam JmjC domain, hydroxylase 794 843 IPR003347 -
Vivi1g05630 934 MobiDBLite consensus disorder prediction 122 138 - -
Vivi1g05630 934 ProSiteProfiles JmjC domain profile. 574 864 IPR003347 -
Vivi1g05630 934 SMART cupin_9 581 864 IPR003347 -
Vivi1g05630 934 Gene3D Cupin 462 873 - -
Vivi1g05630 934 Pfam WRC 16 56 IPR014977 -
Vivi1g05630 934 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 898 IPR045109 GO:0032454|GO:0033169
Vivi1g05630 934 ProSiteProfiles Zinc finger RING-type profile. 201 248 IPR001841 -
Vivi1g05630 934 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 196 262 IPR018866 -
Vivi1g05630 934 MobiDBLite consensus disorder prediction 139 153 - -
Vivi1g05630 934 SUPERFAMILY Clavaminate synthase-like 483 874 - -
Vivi1g05630 934 MobiDBLite consensus disorder prediction 179 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05630 Vivi-Chr1 123830500 123837367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05630 16 161 GRF Transcription Factor Family AT4G37740 28.025 1.10e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi1g05630 JmjC 3.3e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05630 K15601 - gmx:100801287 1490.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05630 1 123830500 123837367 Vivi1g05630 1 123830500 123837367 ECH