Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05629 ATGACTGAACAAACAATCCCTCTGAAAACCGAAACCGCCATGGCAGAAGCTACCAAAGAACCCGAAGAAAAAACCTTCGAAGATTTAGGGTTAGACGCACGCCTCATTCGCGCTTTACTGAAGAAGAAAATCGAAAAACCTACTCCAATTCAACAACACGCGATTCCATATATTCTAGAAGGTAAAGACGTGGTTGCTCAAGCTCAAACAGGTTCCGGGAAAACACTTGCGTACCTTCTCCCTCTGCTTCAGAAGCTTTTTACTAGTAATGGTGATAGGAAGAAGCTAGCACCAAATGTTTTTATTCTTGTTCATACTGCTGAACTCTGTCAACAGATATGTGTGGAAGTTAAGTCACTCCTTGAGTTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATAACAAAATGCTTGCTACTGACTTGCAAGCAGCACTGGTTGGACCTCCTGATGTTTTGATTTCCACTCCTGGTTGCCTAGCTAAGTGTTTGTCCAACTCAATACTTCTGCCAGCATCCATTAATGACTCCCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCACAAGGGTATGAAAATGACATAAAAGCTTTAACACCTCACATACCGAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATTAAGTGACGATGTTCACAAATTAAAAAATTTGATTTTACACAACGCTATAGTTTTGACTTTGTCCGAAAAGGAAAACCACAAGGATGAGATCATCCCTAAAAATGTTCAGCAGTTCTGGATCTCTTGTCCTGCCAATGATAAGCTGCTCTACGTCCTTGCTATGTTGAAGTTGGAGTTAGTTCAAAAGAAAGTTTTGATATTCACTAATAACATAGATACAAGTTTCAGATTGAAACTTTTCTTGGAAAAGTTTGGGATCAAGTCTGCTGTTTTAAATGCTGAATTGCCTCAAAATTCCCGTCTACATATTCTCGAGGAATTCAATGCGGGCCTATTTGATTATCTAATTGCAGCAGATATCAGCCAGTCAACTGAGAAGGATGAAGCACCTAAGGAAAATGTTGTTGGATCGCGAAAGTCTAGAAAACATCCAAAGCTAAAATTAGATTCTGAATCTGGAGTAGGAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCGCAGTGTGGCAGGATACATACATCGAATTGGACGTACTGGAAGAGCATACAGTTCTGGTGCTTCTATCACCTTGGTTTCTTCAGATGAAATGGAGACCTTTGAAGAAGTAAGATCTTTTGTTGGCGACGATGAAAACAACGTCGGCTCACCCTCAATTGCCGAGTTTCCATTACTCACCAAGAATGCAGTAGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTTCGTGAATCACGAGCCCAGGATTTGAGAAATGAGATTTTGAACTCTGAAAAGTTGAAGTCCCACTTTGAAACTAATCCGAGAGACCTAGCCCTGTTGAAACATGACAAAGTTTTGAGCAAGAACGCCCCTCCTCCACACCTTAGGGATGTCCCAGACTACCTAATCGACAAAACAACTAAAGAGGCAAGGGAAATGGTTAAGCTTACCAGAGATGCAATGGGAAATAATAATCGCAGAGGGGGTTCCAAGAGAAAATCAAGAAAAGGCGGCGACCCTCTGATGGCTAGTGGGGTATCGAAAAGACCGCACAAAGGTTTTAAAAAAGAAGGTGGAAAAAAGGAAGGTGGAAGCAATGGTAAAAACAGTGATAGACAAAAACACAAAAAGGCAAAGGCATTTTGA 1821 0.4069 MTEQTIPLKTETAMAEATKEPEEKTFEDLGLDARLIRALLKKKIEKPTPIQQHAIPYILEGKDVVAQAQTGSGKTLAYLLPLLQKLFTSNGDRKKLAPNVFILVHTAELCQQICVEVKSLLELCRVQLKVVQLNNKMLATDLQAALVGPPDVLISTPGCLAKCLSNSILLPASINDSLETLVLDEADLLLSQGYENDIKALTPHIPRSCQCLLMSATLSDDVHKLKNLILHNAIVLTLSEKENHKDEIIPKNVQQFWISCPANDKLLYVLAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIAADISQSTEKDEAPKENVVGSRKSRKHPKLKLDSESGVGRGIDFKNVYTVINFEMPRSVAGYIHRIGRTGRAYSSGASITLVSSDEMETFEEVRSFVGDDENNVGSPSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKSHFETNPRDLALLKHDKVLSKNAPPPHLRDVPDYLIDKTTKEAREMVKLTRDAMGNNNRRGGSKRKSRKGGDPLMASGVSKRPHKGFKKEGGKKEGGSNGKNSDRQKHKKAKAF 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05629 606 Gene3D - 2 238 IPR027417 -
Vivi1g05629 606 CDD DEADc_DDX56 31 238 - -
Vivi1g05629 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 422 IPR027417 -
Vivi1g05629 606 SMART ultradead3 43 256 IPR014001 -
Vivi1g05629 606 Pfam DEAD/DEAH box helicase 48 225 IPR011545 GO:0003676|GO:0005524
Vivi1g05629 606 CDD SF2_C_DEAD 253 416 - -
Vivi1g05629 606 MobiDBLite consensus disorder prediction 575 596 - -
Vivi1g05629 606 Gene3D - 239 443 IPR027417 -
Vivi1g05629 606 MobiDBLite consensus disorder prediction 541 606 - -
Vivi1g05629 606 Pfam Helicase conserved C-terminal domain 264 407 IPR001650 -
Vivi1g05629 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 236 IPR027417 -
Vivi1g05629 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 236 IPR014001 -
Vivi1g05629 606 MobiDBLite consensus disorder prediction 345 366 - -
Vivi1g05629 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 272 454 IPR001650 -
Vivi1g05629 606 SMART helicmild6 293 407 IPR001650 -
Vivi1g05629 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Vivi1g05629 606 PANTHER RNA HELICASE 18 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05629 Vivi-Chr1 123815746 123822607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05629 25 448 Eukaryotic Initiation Factors Gene Family AT3G19760 26.107 1.43e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05629 K14810 - gmx:100800749 895.575