Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05626 ATGGATTCCAACAACAAATCCTCCGAACAAGTCATTTCAGAATTGGTTGAAATGGGTTTTGACCATTCCAAAATTCTCGAAGCCATTAAAGTAGTAGGTCTATCGATTCCAAGCATTGTGGAACATATCTTCAATCCTAACACTAGTACTAGTAAAAGCAATGATCGTGAACCATCCACTAGTAAAGGGAATGCTCTCAAAAAACGAACTTTTTCATCTTCCTTTCAAGTTCCGAAGCCGAGAACAATCAACCATTATTTTCAATCCACTGATAAAGTCAATGGCAAAAGAAAAAATGCTATTGTTGTTATTGATGATGATAATGATGATGATGCGGAAGAGTATAAGGAGGCTTTACCTCAAATGGGAATGGATATTGATCGCGGTGTTGCGTCGGATTGGGAGCAAAGAGCTAGCATTTTGTTGCAAAAGCATTTTGGTTTTTCGTCCTTGAAAAGTTTTCAGAAGGAAGCTCTCTCTGCTTGGATTGCTCATAAAGACTGTCTTGTCCTGGCTGCAACTGGATCTGGGAAATCTCTGTGCTTTCAGATTCCGGCTTTGTTAACTGGGAAAGTCGTAGTTGTGATTTCGCCTTTAATAAGCCTAATGCATGATCAATGCTTAAAGCTAACAAAACATGGAATCAGTGCCTGTTTTCTTGGATCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTATAGTATAGTGTATGTTTGCCCAGAGACAGTCCTAAGATTGATTCAACCTCTGCAGAAGCTTGCAGAAAGCCGTGGTATAGCTTTGTTTGCAATTGATGAGGTGCACTGTGTTTCTAAATGGGGTCATGATTTCCGTCCTGCTTACAGCCGACTATCTGCATTGAGGGAAAATTTCACTACTGGCAAGCTAAAATCCCTGAAATTTGATATACCTATAATGGCATTGACAGCTACAGCTACAAAGAGAGTTCAAGAAGACATTTTAAAATCGCTACGCATGTCAAAAGATACAAATGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCAAGGTAAAGAATAGTAGAACATCATGGGCTTCTTATGAGAAAGATTTTCATGAGCTGATTAAAGTATATGGTGGAAATAAAAAAGCTTTCACCTCATATGATGCCGATGATGTTTCCATTTGCTCTGATTCTGGTGAAATGTCTGATACGGACAGTATTTCTTCTTATGATGTGGACGGCGATGAAGACGACTATGATGATAAAGATAGTAATGCAATGCACTCACGAAACACCGGCAATCATAAGAAAAGAAGAAAATTGACGATCGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCAGATGACTTGGATGTTGCATGTGGTGAATTTTGTGTCCAACCTCCTCCGAAGCAATGTGAGTCATCTGAGACAATTGATCCACCTACAAATCCAGAAAAAAGACTCAAAATGCTTAAGGGGCATTTGGAACTAGGACCAACAATTATATATGTACCCACAAGAAAAGAAACAGTGAGAATTGCGAAGTATCTATGCAAGTCTGGTGTGAAGGCTGCTGCTTATAATGCCGGGCTGCCCAAGTTGCATCTAAGAAGGACTCATAAAGAGTTTCATGAAAATACTTTAGAGGTTGTTGTTGCAACGATAGCATTTGGAATGGGAATTGACAAATCAAATGTTAGAAGAATCATTCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTATATGCAAATCTAGCAAGGAAGCCATCACTTTTGCCAAGTCGTAGAAGTGAAGAAATGACAAAACAAGCGAATATCATGTTGTCTGATTGTTTCAGATATGGGATGAATATTTCATGTTGTCGAGCAAAGACACTTGTAGAATACTTTGGAGAGGATTTCAGCCATCAGAAATGTCTCATATGTGATGTGTGCACTAATGGACCACCTCAAAGGAAGAATCTAAAAGAGGAGGCTTGTATTTTACTGCAAACTATAGGGTCCCATAATGCACGTAACTATTCCATGGATTCCTCATATAATGATGATATCCATTTTGATTCCAAGGATAGAAGACAAGGAGAGCGGCCAAGTCTTATGACATTAGTTAGAAATATAAGGGAGCAGTTTCAAAAATTTGTAACAACTGATATATTGTGGTGGAGAGGTCTTACTCGAATTTTGGAAGCTAAAGGATATATTAGAGAGGGAGATAACAAGACCAATGTTCAGATAAAATACCCGGAACTAACCGAACTAGGTTTGGAGTTTGTGAAGTCCACGGCTGAAGAATCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGAAACAAAAACTGACAAACCATTTTCCTCATTCTCCGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGTCTAGAAAGAATGCAACATGATAGAAGTCCAACAAAGCAGCAAAGCCCTGGAAAGCGAAGAAAAAGGAAAGGTAGAAAAGCGAAACCCGATTTGAGGACTTCTCGAGGTAGACTAACAGCAAAGCTTTCAAAACTTAAGTGA 2598 0.3957 MDSNNKSSEQVISELVEMGFDHSKILEAIKVVGLSIPSIVEHIFNPNTSTSKSNDREPSTSKGNALKKRTFSSSFQVPKPRTINHYFQSTDKVNGKRKNAIVVIDDDNDDDAEEYKEALPQMGMDIDRGVASDWEQRASILLQKHFGFSSLKSFQKEALSAWIAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVEKKAMRGMYSIVYVCPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPAYSRLSALRENFTTGKLKSLKFDIPIMALTATATKRVQEDILKSLRMSKDTNVVLTSFFRPNLRFKVKNSRTSWASYEKDFHELIKVYGGNKKAFTSYDADDVSICSDSGEMSDTDSISSYDVDGDEDDYDDKDSNAMHSRNTGNHKKRRKLTIEFLENDVDVFQSADDLDVACGEFCVQPPPKQCESSETIDPPTNPEKRLKMLKGHLELGPTIIYVPTRKETVRIAKYLCKSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEEMTKQANIMLSDCFRYGMNISCCRAKTLVEYFGEDFSHQKCLICDVCTNGPPQRKNLKEEACILLQTIGSHNARNYSMDSSYNDDIHFDSKDRRQGERPSLMTLVRNIREQFQKFVTTDILWWRGLTRILEAKGYIREGDNKTNVQIKYPELTELGLEFVKSTAEESFYVYPEADMLLETKTDKPFSSFSEWGKGWADPEIRRQRLERMQHDRSPTKQQSPGKRRKRKGRKAKPDLRTSRGRLTAKLSKLK 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05626 865 MobiDBLite consensus disorder prediction 817 833 - -
Vivi1g05626 865 MobiDBLite consensus disorder prediction 817 865 - -
Vivi1g05626 865 FunFam ATP-dependent DNA helicase 123 343 - -
Vivi1g05626 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 600 IPR027417 -
Vivi1g05626 865 SMART helicmild6 509 590 IPR001650 -
Vivi1g05626 865 SMART ultradead3 147 352 IPR014001 -
Vivi1g05626 865 Pfam Helicase conserved C-terminal domain 488 589 IPR001650 -
Vivi1g05626 865 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Vivi1g05626 865 NCBIfam RecQ family ATP-dependent DNA helicase 141 369 IPR004589 GO:0004386|GO:0006310
Vivi1g05626 865 Gene3D - 602 785 IPR036388 -
Vivi1g05626 865 CDD DEXHc_RecQ 142 342 - -
Vivi1g05626 865 Pfam RecQ zinc-binding 613 662 IPR032284 -
Vivi1g05626 865 Gene3D - 472 599 IPR027417 -
Vivi1g05626 865 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 635 IPR001650 -
Vivi1g05626 865 PANTHER DNA HELICASE RECQ FAMILY MEMBER 132 756 - -
Vivi1g05626 865 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 335 IPR014001 -
Vivi1g05626 865 MobiDBLite consensus disorder prediction 44 71 - -
Vivi1g05626 865 FunFam ATP-dependent DNA helicase 601 779 - -
Vivi1g05626 865 MobiDBLite consensus disorder prediction 393 429 - -
Vivi1g05626 865 FunFam ATP-dependent DNA helicase 471 599 - -
Vivi1g05626 865 MobiDBLite consensus disorder prediction 834 849 - -
Vivi1g05626 865 Pfam DEAD/DEAH box helicase 154 322 IPR011545 GO:0003676|GO:0005524
Vivi1g05626 865 Gene3D - 106 343 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05626 Vivi-Chr1 123760055 123765863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05626 484 608 Eukaryotic Initiation Factors Gene Family AT5G11170 26.400 7.44e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05626 K10900 - gmx:100793222 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05626 1 123760055 123765863 Vivi1g05626 1 123760055 123765863 ECH