Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05624 ATGTCTCGCCCAATTGAGCCATTGAAAGAAATCAATGATTCCAAAGATTTGTGGAAGATCTCAGTTAGAAGCAAGCATCTATGGTCTGTCACAAGTTCTTCAAACAAAGAACACATGGAGATGGTTTTGGTTGATTCTAAGCGTGATATGATTCAAGCTGTTGTCCCTGCTTATTTGCTTTCGAAATTCAAATCTGAAATTGAAACAGGAAACTCTTATATCATGCAAAATTTTAAAGTTGGGAAGAATGATTTTGCTTTTAAGTCGACAAATCATACATACAAATTGATTTTTTGTGGGTCAACTTCTGTTAAGAAAGCAGAATTTCCTGACATCCCTCATAACTACCTTAACATTATTGGTTTGAATTCCATAGTTGAAGGAAGGTTTCAATCAAATGTTTTGGTTGATTTGATTGGAGGAATCACTGATATCTCTCAAACCCAAGTTAACGGTGACAATAGCAAGAACATAATAGTTTTTTCAATTGTAGATGCCAGCAAAACAGTTATACAATGTACTCTTTGGGGGCAACTTGCAATTCAGCTATATGACTATTATAAAAATAATAAGCAAGGTTCTGATATTGTCATTGTGCTAATCAATGCAAGGGTTAAAAAGGCTCAAGGAGGATTTCCAGTTAGTGTTTCCAACACATGGAATGGAACGAAATTGTTGATTAATGACCTTGCTATTGAAGAAGTTACGAATCTAAAAGAAAGACTTGGTGTTGATTTGCCTTTGTAA 747 0.3454 MSRPIEPLKEINDSKDLWKISVRSKHLWSVTSSSNKEHMEMVLVDSKRDMIQAVVPAYLLSKFKSEIETGNSYIMQNFKVGKNDFAFKSTNHTYKLIFCGSTSVKKAEFPDIPHNYLNIIGLNSIVEGRFQSNVLVDLIGGITDISQTQVNGDNSKNIIVFSIVDASKTVIQCTLWGQLAIQLYDYYKNNKQGSDIVIVLINARVKKAQGGFPVSVSNTWNGTKLLINDLAIEEVTNLKERLGVDLPL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05624 248 Gene3D - 3 108 IPR012340 -
Vivi1g05624 248 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Vivi1g05624 248 SUPERFAMILY Nucleic acid-binding proteins 118 245 IPR012340 -
Vivi1g05624 248 CDD RPA1_DBD_B_like 137 242 - -
Vivi1g05624 248 Gene3D - 110 244 IPR012340 -
Vivi1g05624 248 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Vivi1g05624 248 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05624 Vivi-Chr1 123685150 123686345 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05624 1 210 Core DNA Replication Machinery Family AT5G08020 23.348 6.35e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05624 - - vvo:131614721 450.284