Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05623 ATGAGGTTTGGTTTTGAGTTTCTTACAATGATGTTGTTTGTCATCATTATGACAGTGTTATTGATTCCTTTATCTATATCATCATCATCATCATCACAAAGGACTCATGTTTTGAGTGTTGGAAGGTTCCATGTTGATAGTTTACAAGATAGTTTTTTCTTGAAGGAAGAGGTGGTGAAAGTTGAGAAAATCTCAGGTTTAGATGAGAATGAAGAGAAACAAGGTTTTATAGTTGAAAAGTTTAGATCTTTACTTGGTTTAAAGAGTTTTCACAAAAGGGTACATTCTAAATCCAATGGTGAAGAAGCTACATCACCTTCTCCAGCACCGGCGCCGGCACCGGCGCCGTCTCAAGGATTGCATTTGCATTCTCATCCTCATCATCAAAAACATCATCTTCATTGGAAGCAGATACCAAAGAAGGTTCATCATGAAGATGATAGAGGAAGAAGAGATACAAGAATACTAGTAGCTGTTTTTGTTTCTGTTGGAGTTGCTTCATTGGTTGGTGCTTTTGGTTTGATGCTATTTTGCAGGAAGAAATTCACAAATCACAAAAAGAAGAAACCAAAGAGGACAATGCCACTTTGTAGCAGCAGTAGCAAAGGAACAAAAAAAGGTACTAGTTATCAAAATTCAGGACTAGATCTGTTTTATCTTGATGCATTAGGTGAAGAAGATATTGAGCAACAAAATGCTTGTGGCTTGAAAAAGACTAGTGAGGAAATTGTTTCTGTTCATCAAGAGGTGGAAATGGAAAATTCTGATAAAATTGTTGATGAAGATTGTGATTCATCTGAGGATGAAAGCTTTCATTCTTTGGTTGATTCACAGTCCAATTTGAGACTCTCTAATGCTTCTGCTTCTAGTCTTGGTGACACACACTCTATGTTGTCACCTCAAGATTCATTTTCTTTGGTACAAAACCAAGTATCTGATTTTCCACAAAACTCAATCTCAAACATACATGAAGAGATTGAAACCTTTGTGCAATGTCCAAAAACATCTACTTTATCTCCTCCTCCTCCTCCTCCACCTACTCCTCCTCCACCGCCGCCACCGACACCACCATTGAAAATGCCACTCTTTTCTTTACATTCTTCACTAACGTCTTCTTCATCTAGAGTTTCATCTCACTCTCCACTTTCCTTAACATCTCGTACTTTGTCTTCTATAAATTCAGAAACTTCTTCAAGATCAAATCAAAGTCCTGAAAAAGATCCATTTTCTCTATCTCCACCTAACAACACAAAATCTCCTCCACCACCACCATGTCCTCCTCCATTTCCAAAAGGAAATAGCAACAACAAGGCCAAAACACCACCTCCTCCACCGTACGAATTCCCTCAATCACCACTTGGTAAAGATGGTATACCATTGGCTAAACTCAAACCACTTCATTGGGACAAAGTAAGAGCTGCACCAAACCGCACAATGGTTTGGGACAAACTAAGATCAAGCTCATTCGAGTTTGATGAGGAAATGATTGAGTCACTTTTTGGGTACAATTTGCAAAATTCAATGAAAAATGATGAAAGTAAGAGTAAAACACCCTCTCCAAGCAAGCATGTACTAGATCCAAAGAGGCTGCAGAACATAACAATACTCTCAAAAGCTCTTAATGCAACAGCTGAACAAGTATGTGATGCACTAATGCAAGGGAAAGGATTGTGCTTGCAACAACTAGAGGCACTAGTGAAAATGGTACCTACCAAAGAAGAAGAGTCAAAGCTCTTCAATTATAAAGGTGACATCAATGAATTGGGGTCCGCCGAAAAGTTTGTGAGAGCAGTGCTTTGTGTCCCATTTGCCTTTCAACGAGTAGAAACTATGCTTTACAAAGAGACTTTTGATGATGAAGTTGTTCACCTAAGAAACTCATTTTCAATGCTAGAGGAGGCATGCAAGGAGCTGAGATCAAGCAGACTATTCTTGAAACTTCTAGAAGCAGTACTAAAAACAGGAAACCGAATGAACGTTGGAACGATAAGGGGAGGCGCAAGAGCGTTCAAACTCGACGCGCTACTCAAGCTAGCAGATGTGAAAGGAACAGACGGAAAAACCACCTTACTCCACTTTGTTGTTCAAGAGATTGTCCGTTCAGAAGGAATAAGAGTTTCAGACAGCATAATGGGAAAAATAAGCCAAAAAAGCAACAAAAACAGAACAGAAGAAGAGAAAGAAGAAGACTACAGAAAAATGGGACTAGAACTAGTGTCAGGTCTCAGCACAGAATTATACAACGTTAAAAAGACGGCGACAATCGACTTAGACGTTCTCGCCAGTTCGGTTTCGAATCTATACGACGGGATGGTTAGGCTGAAACACTTGGTGGAAAAGGAGTTGCATGAGGATGAAATGAGTCATAATTTTGTGGTGACTATGAAGGTGTTCTTGCAATATGTGGATGGAAATTTGAAGGAGTTGAGAGGTGAAGAAGATGGAGTGATAGCACTTGTTAAGGAAATAACAGAATATTTTCATGGAGATGTTAGTAAAGAGGATAATCCACTTAGGATATTTGTGATTGTGAGAGATTTTATGGGCATGTTGGATAATGTTTGTAAAGAGCTTAGAAAGAGTAAAGGCTCACGTACTCCAAATCCTCTTGCACCTTTTAGATAG 2625 0.3905 MRFGFEFLTMMLFVIIMTVLLIPLSISSSSSSQRTHVLSVGRFHVDSLQDSFFLKEEVVKVEKISGLDENEEKQGFIVEKFRSLLGLKSFHKRVHSKSNGEEATSPSPAPAPAPAPSQGLHLHSHPHHQKHHLHWKQIPKKVHHEDDRGRRDTRILVAVFVSVGVASLVGAFGLMLFCRKKFTNHKKKKPKRTMPLCSSSSKGTKKGTSYQNSGLDLFYLDALGEEDIEQQNACGLKKTSEEIVSVHQEVEMENSDKIVDEDCDSSEDESFHSLVDSQSNLRLSNASASSLGDTHSMLSPQDSFSLVQNQVSDFPQNSISNIHEEIETFVQCPKTSTLSPPPPPPPTPPPPPPPTPPLKMPLFSLHSSLTSSSSRVSSHSPLSLTSRTLSSINSETSSRSNQSPEKDPFSLSPPNNTKSPPPPPCPPPFPKGNSNNKAKTPPPPPYEFPQSPLGKDGIPLAKLKPLHWDKVRAAPNRTMVWDKLRSSSFEFDEEMIESLFGYNLQNSMKNDESKSKTPSPSKHVLDPKRLQNITILSKALNATAEQVCDALMQGKGLCLQQLEALVKMVPTKEEESKLFNYKGDINELGSAEKFVRAVLCVPFAFQRVETMLYKETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQKSNKNRTEEEKEEDYRKMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLYDGMVRLKHLVEKELHEDEMSHNFVVTMKVFLQYVDGNLKELRGEEDGVIALVKEITEYFHGDVSKEDNPLRIFVIVRDFMGMLDNVCKELRKSKGSRTPNPLAPFR 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05623 874 SMART it6_source 453 866 IPR015425 -
Vivi1g05623 874 MobiDBLite consensus disorder prediction 364 413 - -
Vivi1g05623 874 MobiDBLite consensus disorder prediction 194 208 - -
Vivi1g05623 874 Pfam Formin Homology 2 Domain 459 851 IPR015425 -
Vivi1g05623 874 MobiDBLite consensus disorder prediction 95 147 - -
Vivi1g05623 874 MobiDBLite consensus disorder prediction 336 360 - -
Vivi1g05623 874 SUPERFAMILY Formin homology 2 domain (FH2 domain) 466 861 - -
Vivi1g05623 874 PANTHER FORMIN-RELATED 371 866 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vivi1g05623 874 MobiDBLite consensus disorder prediction 189 208 - -
Vivi1g05623 874 MobiDBLite consensus disorder prediction 123 138 - -
Vivi1g05623 874 ProSiteProfiles Formin homology-2 (FH2) domain profile. 453 874 IPR015425 -
Vivi1g05623 874 MobiDBLite consensus disorder prediction 332 458 - -
Vivi1g05623 874 Gene3D Formin, FH2 domain 475 867 IPR042201 -
Vivi1g05623 874 MobiDBLite consensus disorder prediction 414 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05623 Vivi-Chr1 123674126 123678289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05623 61 874 FH2 protein (formin) Gene Family AT3G05470 48.698 0.0 654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05623 1 123674126 123678289 Vivi1g05623 1 123674126 123678289 ECH
Vivi1g05623 1 123674126 123678289 Vivi1g05623 1 123674126 123678289 PCT