Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g05609 | ATGAGTGGCAAGTCAAGTCGCACTTTATATGTTGGCAATCTTCCTGGCGATATTCGCTTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCTATCGTTGACATTGATTTGAAGATCCCTCCCAAACCACCAGGTTATGCTTTTGTTGAGTTTGAGGATGCTCGTGATGCTCAGGATGCAATTTACTACAGAGATGGTTATGATTTTGATGGTTATCGATTACGGGTTGAACTTGCACATGGTGGACGGTCAAGTTCATCGTCAGTAGATCGATATAGTAGGCATAGCGGTAGAAGTGGTAGCTATGGAGTTTCCAGGCGATCTGACTATCGTGTTCTGGTGACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCTCAAGTATTCCGGGAGCGTGGAGGCTTGACTGGGATAGTGGATTATACCAATTATGATGATGTGAAATATGCTATCAGGAAACTTGATGACTCTGAATTTCGAAATGCATTTTCTCGGGCATACATACGAGTGAGGGAATATGATCGGAGTTATTCTAGAAGCCCTAGTCGTGATTCAAGGAGGAGCTATTCTCGAAGCCGCAGCCCATATGCATCACGAAGTCGAAGCCGCAGTCTAAGTCATAGCTACAGTGGCAGGAGCAGAAGTTTGTCTCCAAAAGCAAGACACGCTCGTCGCTCATTATCTCTCTCAAGATCCCATACAAGATCCAGATCCCCGAGCTCGTCTCCTAGACGTTACCAGAGTCGCAGTCCTAGCCAAAGTTCAAGGAGCATGTAA | 819 | 0.453 | MSGKSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLRVELAHGGRSSSSSVDRYSRHSGRSGSYGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRAYIRVREYDRSYSRSPSRDSRRSYSRSRSPYASRSRSRSLSHSYSGRSRSLSPKARHARRSLSLSRSHTRSRSPSSSPRRYQSRSPSQSSRSM | 272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g05609 | 272 | MobiDBLite | consensus disorder prediction | 188 | 272 | - | - | |
| Vivi1g05609 | 272 | MobiDBLite | consensus disorder prediction | 246 | 272 | - | - | |
| Vivi1g05609 | 272 | FunFam | serine/arginine-rich splicing factor SR34A-like | 111 | 188 | - | - | |
| Vivi1g05609 | 272 | Gene3D | - | 111 | 188 | IPR012677 | - | |
| Vivi1g05609 | 272 | CDD | RRM2_SF2_plant_like | 111 | 186 | - | - | |
| Vivi1g05609 | 272 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
| Vivi1g05609 | 272 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Vivi1g05609 | 272 | MobiDBLite | consensus disorder prediction | 84 | 104 | - | - | |
| Vivi1g05609 | 272 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 5 | 269 | - | - | |
| Vivi1g05609 | 272 | SMART | rrm1_1 | 112 | 181 | IPR000504 | GO:0003723 | |
| Vivi1g05609 | 272 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Vivi1g05609 | 272 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 178 | IPR035979 | GO:0003676 | |
| Vivi1g05609 | 272 | MobiDBLite | consensus disorder prediction | 205 | 229 | - | - | |
| Vivi1g05609 | 272 | MobiDBLite | consensus disorder prediction | 188 | 204 | - | - | |
| Vivi1g05609 | 272 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Vivi1g05609 | 272 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 175 | IPR000504 | GO:0003723 | |
| Vivi1g05609 | 272 | Gene3D | - | 2 | 110 | IPR012677 | - | |
| Vivi1g05609 | 272 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 1 | 110 | - | - | |
| Vivi1g05609 | 272 | MobiDBLite | consensus disorder prediction | 231 | 245 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi1g05609 | Vivi-Chr1 | 123269900 | 123274494 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1g05609 | 11 | 80 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 36.986 | 5.83e-06 | 45.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi1g05609 | K12890 | - | gmx:100794282 | 337.806 |