Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05607 ATGGGTCGAGTAGATGCCGCTGGTTCCAAGGGGAAGAAGAAGGGATCTACAACCTTCACCATCGACTGCGCTAAGCCTGTAGAGGACAAGATCATGGACATTGCTTCCCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTTGGTGGTAAGGCCGGTGCCCTGGGTGATGCTGTTACTGTTTCACGCGAGAAGAGCAAGATCACAGTTACTTCTGATAGTACCTTTTCTAAAAGGTATCTCAAGTACTTGACCAAAAAGTACTTGAAGAAGCACAATGTCCGGGATTGGCTCCGTGTCATTGCTTCTAACAAAGACAGAAATGTTTATGAATTGCGATACTTTAACATCGCCGAGAATGAAGGCGAAGAAGAAGATTAA 378 0.4497 MGRVDAAGSKGKKKGSTTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVSREKSKITVTSDSTFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05607 125 Pfam Ribosomal L22e protein family 16 123 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vivi1g05607 125 Gene3D - 6 125 IPR038526 -
Vivi1g05607 125 FunFam 60S ribosomal protein L22-2 5 125 - -
Vivi1g05607 125 PANTHER 60S RIBOSOMAL PROTEIN L22 6 125 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05607 Vivi-Chr1 123203485 123205250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05607 1 125 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 84.800 4.90e-64 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05607 K02891 - csav:115719687 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05607 1 123203485 123205250 Vivi1g05607 1 123203485 123205250 ECH
Vivi6g04915 6 153220737 153222157 Vivi1g05607 1 123203485 123205250 ECH
Vivi1g05607 1 123203485 123205250 Vivi6g04915 6 153220737 153222157 ECH
Vivi6g04915 6 153220737 153222157 Vivi1g05607 1 123203485 123205250 PCT