Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05603 ATGGGTATCGATCTGAAGGCCGGAGGTAAGAACAAGAAGTCCAAGAGAACAGCACCAAAGTCCAATGATATCTACCTCAAGCTCTTGGTCAAGCTTTACCGATTCCTTGTTCGGAGAACCAGCAGCAAATTCAACGCTGTTATACTCAGGAGGTTGTTCATGAGCAAGGTTAACAGGCCTCCTCTATCTTTGTCAAGGTTGATCAAGTATTCTAAGGGGAAGGAAGGTAAAATTGGTGTGGTTGTCGGCGCTGTAACCGATGATATCCGTGTGTACGAAGTTCCAGCCATCAAAGTTGTAGCACTTAGGTTTACAGAGACTGCAAGGGCAAGAATTGTAAAGGCTGGAGGAGAATGCTTGACGTTCGATCAGTTGGCTAAAATAGCCCCTCTGGGACAAAACACGTTCCTTCTTAGAGGTCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCGTGCTCCTGGTGTTCCACACAGCCACACCAAGCCTTATGTGAGAGCAAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGAAACAGTCGTGGATTCAGAGTTTGA 564 0.4645 MGIDLKAGGKNKKSKRTAPKSNDIYLKLLVKLYRFLVRRTSSKFNAVILRRLFMSKVNRPPLSLSRLIKYSKGKEGKIGVVVGAVTDDIRVYEVPAIKVVALRFTETARARIVKAGGECLTFDQLAKIAPLGQNTFLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRAKGRKFEKARGKRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05603 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Vivi1g05603 187 FunFam 60S ribosomal protein L18 1 187 - -
Vivi1g05603 187 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Vivi1g05603 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vivi1g05603 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vivi1g05603 187 Gene3D - 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05603 Vivi-Chr1 123173293 123174972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05603 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 74.194 2.51e-98 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05603 K02883 - gmx:100499789 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05603 1 123173293 123174972 Vivi1g05603 1 123173293 123174972 ECH
Vivi6g04908 6 153095630 153099010 Vivi1g05603 1 123173293 123174972 PCT