Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05602 ATGGCTGCGAATAAAAATGTACAGAAAGGAAGAAGAATTACTATAATTGGCGTATCTACTTTGTTATTGGTCGTTATGATTGTTGCTGTCACGGTTGGCACCAATAGTAATCATAATGATCATGAGGATAATATAGAACACAATAGAAAGAATCATGTTGCTTCTACAATGAAAGCGGTACAAAACATTTGTAAGCCCACGGATTTCAGGAAAGAATGTGAGGAATCCCTAATTGCAGAAGCAAAAGCCGGCAATGTTACCGACCCAAAAGAACTCATTAAAATTGCATTCAATGTTACTATCAATAAAATTGGTGAAAACCTCAAGGAAACTGGTTTCGTTCACGAGGTTGAAAAGGATCCTAGATCCAAGGAGGCACTTGATACTTGTAAGAAACTTATGAACCTCTCAATTGGTGAACTCACAAGGTCACTTGATGGAATAAGTAAGTTTGATCTTCAAGATATTGATCAAATTCTCATGAATTTGAAGGTTTGGCTCAGTGGTGCTGTTACATACATGGATACATGCTTAGATGGATTTGAATACACTACTAACGAAGGTGGTAAAAAGATGAAAGAGTTATTAACTTCAAGCATGCATATGAGTAGCAATGCCCTTGCAATCATATCAGATTTTGCAGACACTTTCTCTGATTGGAACGCCTCAAAAATTATCGGACGTCATCTTCTTCATGATCCTAAGAGTACTCCTTCTTGGATCGAGCATCACAAACTAATTGATGTAAATACAAGCACGTTAAAACAAATACCTAATGTTACCGTAGCTTTAGATGGTAGCGGTGATTTTAAGACAATCAATGAGGCATTGATGAAGGTTCCTGAAAAGAGCAAAAAACCATTTGTAATTTACATTAAAGAAGGTGTTTACAGAGAGTATATTGAAGTTACCCAACATATGACTCATGTTGTGTTTTTTGGTGATGGTGGTCAGAAGACAAGAATCACTGGCAACAAAAACTTTGTTGATGGAATTAACACTTACAACACTCCCACTGTTGCCATTCAAGGAGATCACTTTACTGCTATTAATATGGGTTTTGAGAACTCAGCTGGTCCACAGAAACATCAAGCAGTGGCAATAAGAGTTCAAGGAGATAAGTCCATCTTCTTCAATTGCTCAATGGATGGATATCAAGATACACTTTACGTACACGCAATGCGACAATTCTATCGTGATTGCACCATTTCAGGTACCATTGACTTTGTCTTTGGTAATGCATTATCAGTATTCCAAAACTGCAAATTTGTGGTGAGAAAGCCTATGTTACACCAAAAATGCATTGTGACTGCACAAGGAAGGAAAGAAAGATTCCATCCATCCGCCATAGTCATTCAAGGAGGTTCCATTGTTTCTGACCCGGCGTTCTACCCGGTCAGATTCGACCACAAGGCCTACCTTGCTCGTCCATGGAAGAATTTCTCTAGAGCCATCTTCATGGATATTTTCATTGATGATTTGATTAACCCTGATGGTTATTTGCCATGGCAAACACCGGAAGGTTTTTCTGGCATGGACACATGCTTCTATGCGGAATACCATAACTATGGCCCTGGTTCAGACAAATCAAAGCGTGTGCGTTGGCCTGGAATAAAGAACCTCAATTCAAAGACTGCACATTTGTTTGCACCATCCAAATTCTTCCATGGTGGTGATTGGATTCAGGCAACTGGAGTTCCTTACTTTTCCAGTATTCCTCAACATAACAAGCACAATAAGACTTTCACTAAATGGTGA 1758 0.3874 MAANKNVQKGRRITIIGVSTLLLVVMIVAVTVGTNSNHNDHEDNIEHNRKNHVASTMKAVQNICKPTDFRKECEESLIAEAKAGNVTDPKELIKIAFNVTINKIGENLKETGFVHEVEKDPRSKEALDTCKKLMNLSIGELTRSLDGISKFDLQDIDQILMNLKVWLSGAVTYMDTCLDGFEYTTNEGGKKMKELLTSSMHMSSNALAIISDFADTFSDWNASKIIGRHLLHDPKSTPSWIEHHKLIDVNTSTLKQIPNVTVALDGSGDFKTINEALMKVPEKSKKPFVIYIKEGVYREYIEVTQHMTHVVFFGDGGQKTRITGNKNFVDGINTYNTPTVAIQGDHFTAINMGFENSAGPQKHQAVAIRVQGDKSIFFNCSMDGYQDTLYVHAMRQFYRDCTISGTIDFVFGNALSVFQNCKFVVRKPMLHQKCIVTAQGRKERFHPSAIVIQGGSIVSDPAFYPVRFDHKAYLARPWKNFSRAIFMDIFIDDLINPDGYLPWQTPEGFSGMDTCFYAEYHNYGPGSDKSKRVRWPGIKNLNSKTAHLFAPSKFFHGGDWIQATGVPYFSSIPQHNKHNKTFTKW 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05602 585 Pfam Pectinesterase 259 557 IPR000070 GO:0030599|GO:0042545
Vivi1g05602 585 PANTHER PECTINESTERASE 18 562 - -
Vivi1g05602 585 SMART PMEI_2 55 209 IPR006501 GO:0004857
Vivi1g05602 585 Pfam Plant invertase/pectin methylesterase inhibitor 59 209 IPR006501 GO:0004857
Vivi1g05602 585 FunFam Pectinesterase 56 214 - -
Vivi1g05602 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 213 IPR035513 -
Vivi1g05602 585 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Vivi1g05602 585 CDD PMEI-like_3 63 214 - -
Vivi1g05602 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 213 IPR035513 -
Vivi1g05602 585 NCBIfam pectinesterase inhibitor domain 54 211 IPR006501 GO:0004857
Vivi1g05602 585 Gene3D - 256 573 IPR012334 -
Vivi1g05602 585 FunFam Pectinesterase 253 572 - -
Vivi1g05602 585 SUPERFAMILY Pectin lyase-like 259 569 IPR011050 -
Vivi1g05602 585 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05602 Vivi-Chr1 123167872 123169793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05602 8 583 Carbohydrate Esterase AT3G05610 46.194 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05602 K01051 - gmx:100776244 888.256