Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05601 ATGTCAGAGGGTGGTGATGCACAGAAAGGAAGGAGAATCGCCATAATTGGTGTGTCTACCTTGTTGTTGGTTGCTATGGTTGTTGCTGTCACTGTTGGCGCCAGTCGTAACCAAGGTTACGACGACGATATCGAAAGCAATAGAAGAAATCATGTTTCTTCTACAATGAGAGCTGTGCAGTCCATCTGTAAACCAACAGAATACAAGAAGGAATGTGTGGAAACCCTCACAGCCGAAGCTGCTGCAGGGAATGTGACCGACCCGAAAGAACTCATTAAAATAGCATTCAATGTTACCATGAAGAGAATTGGTGAAAAAATTAAGGAAACTGATCTCATGCATGAGGTTGAGAAGGATCCTAGATCAAAGGATGCTCTTGAAACTTGCAAGCAACTTATGGATCTCTCCATTGGTGAATTCACAAGAGCTATTGATGGAATTGAGCACTTTGATCTTAAGGATATCGACAGAATCCTCATGAATCTGAAGGTTTGGCTCAATGGTGCTGTCACTTACATGGATACATGTGTTGATGGATTTGAGAACACTACAACTGAGGCTGGTAAAAAGATGAAAGACATATTGACATCAAGCATGCACATGAGCAGCAATGCTCTTGCCATCATTTCGGATTTTGCTGACACTGTTTCTAGCTGGAACGTCTCTAAGATTTTCGGACGCCGTCTTCTTGATTCCGATACACCTTCATGGGTTTCTGAACATCGCATGCTCCTTGATGCTAACACAAGTGCCTTCAAACATAAGCCTAATGTTACCGTCGCTTTGGATGGTACCGGTGATGTTAAGACCATCAACGAGGCTTTGTTGAAGGTTCCTGAGAAGAGCGAAAAGCCGTTTATCATCTACATTAAGAAGGGTGTTTACAACGAGTATGTTGAAATTACCAAGCAAATGACCTATGTTGTGTTTATCGGTGAAGGTGGCCAGAAGTCTAGAATCACTGGCAACAAAAACTTTATCGATGGTGTTAATACTTATAGAACCGCCACAGTTGCTATTCAAGGAGATCATTTTACCGCTATTAACATGGGTTTCGAGAACTCGGCTGGTGCACACAAACATCAAGCAGTTGCACTAAGAGTTCAAGGAGATAAGTCCATCTTCTTCAATTGCTCAATGGATGGATATCAAGATACACTTTACGTACACACTATGCGTCAATTTTACCGTGATTGCACCATTTCCGGTACCATTGATTTCATCTTTGGCAATGCCTTATCAGTATTCCAAAACTGCAAATTCGTGGTGAGGAAGCCTTTGGAAAACCAACAATGCATTGTGACCGCACAAGGAAGGAAAGAAAGATTCCAGCCATCAGCCATAGTCATTCAAGGAGGTTCCATTGTGTCTGACCCCGCGTTCTACCCGGTCAGATTCGACCACAAGGCCTACCTTGCTCGTCCATGGAAGAATTTCTCTAGAACCATCTTCATGGATACTTTCATCGACGATTTGATTCACCCCGACGGTTACATGCCATGGCAAACACCCGAAGGGTTTACCGGCATGGACACTTGCTTCTACGCCGAATACCATAACTATGGACCTGGTTCAAACAAATCAAAGCGTGTGCATTGGGCCGGAATATGGAACCTTAACTCAGATGCTGCACATTGGTTTGCACCATCCAAATTCTTCCATGGAGGTGACTGGATTGAAGAAACTGGAGTGCCTTTCTACTCAAGTATTCCTGACCACCATAGGCACAAAAAGACATCGCTTAAATGGTGA 1752 0.4338 MSEGGDAQKGRRIAIIGVSTLLLVAMVVAVTVGASRNQGYDDDIESNRRNHVSSTMRAVQSICKPTEYKKECVETLTAEAAAGNVTDPKELIKIAFNVTMKRIGEKIKETDLMHEVEKDPRSKDALETCKQLMDLSIGEFTRAIDGIEHFDLKDIDRILMNLKVWLNGAVTYMDTCVDGFENTTTEAGKKMKDILTSSMHMSSNALAIISDFADTVSSWNVSKIFGRRLLDSDTPSWVSEHRMLLDANTSAFKHKPNVTVALDGTGDVKTINEALLKVPEKSEKPFIIYIKKGVYNEYVEITKQMTYVVFIGEGGQKSRITGNKNFIDGVNTYRTATVAIQGDHFTAINMGFENSAGAHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFIFGNALSVFQNCKFVVRKPLENQQCIVTAQGRKERFQPSAIVIQGGSIVSDPAFYPVRFDHKAYLARPWKNFSRTIFMDTFIDDLIHPDGYMPWQTPEGFTGMDTCFYAEYHNYGPGSNKSKRVHWAGIWNLNSDAAHWFAPSKFFHGGDWIEETGVPFYSSIPDHHRHKKTSLKW 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05601 583 Pfam Plant invertase/pectin methylesterase inhibitor 58 208 IPR006501 GO:0004857
Vivi1g05601 583 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Vivi1g05601 583 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Vivi1g05601 583 FunFam Pectinesterase 55 213 - -
Vivi1g05601 583 SMART PMEI_2 54 208 IPR006501 GO:0004857
Vivi1g05601 583 Pfam Pectinesterase 257 555 IPR000070 GO:0030599|GO:0042545
Vivi1g05601 583 CDD PMEI-like_3 61 213 - -
Vivi1g05601 583 SUPERFAMILY Pectin lyase-like 255 567 IPR011050 -
Vivi1g05601 583 PANTHER PECTINESTERASE 18 560 - -
Vivi1g05601 583 Gene3D - 251 570 IPR012334 -
Vivi1g05601 583 FunFam Pectinesterase 251 570 - -
Vivi1g05601 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 212 IPR035513 -
Vivi1g05601 583 NCBIfam pectinesterase inhibitor domain 54 210 IPR006501 GO:0004857
Vivi1g05601 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 212 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05601 Vivi-Chr1 123088450 123090546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05601 1 570 Carbohydrate Esterase AT3G05610 47.469 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05601 K01051 - gmx:100776244 917.531