Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05598 ATGAAAACATCAACAACTACCCTATACATTATCATCATCTTCCTCCTCTCTCCATTTCTAACTTCCATCATTTCCTCCCAAAACACCACATGCAACACTACACCCTACCCATCATTCTGCAAAACTACTCTACCTTCTGATTATTTATCTATACATGAACAAACCCTTTTCTTCCTTCAACAATCCTTATCAATCACCAAAACCATTCTTCAACTAATCTCATCTTATCTTAACCAATCCACCATTCCAAATTCCACTTTACTTGTCCTTCAAGATTGTCTTAATCTTGCTGAACTAAACACTGATCTATTATCCACTGTCATAGAAACCGTCAGTAATAGTACTAATAGTGATACTAATATATTTAGTAATCAAGTGTATGATTTGCAAACCTTGCTTAGTGCTGTAATAACCAATCATCAAACATGTTTAGATGGTTTTCATGATGTGAATCCTTATCCAAGAATTAGAACTACCTTATCAAATCCTCTTTCTGATGGGGTCAAACTATATAGCACATCTCTTGCTCTTTTCACTCACGGTTGGGTTAGCAATGATGTTACAAGTTCATCAATAGAGAAAACAATTACAGTGAATAATAGGAAGTTGTTGCAAACAAGTGTTGACAATGTAATAGTGACACAAAAAGTGGTTGTTAACCCTGATGGATCTGGAGATTTTGTCACCATAAATGATGCTGTGGATGCTGCACCTAATAAAACAGGCACCAACAACGAATATCATGTAATTCATGTTGTCGCCGGGGTTTATAGTGAGTATGTTTCTATTGGTAAGAACAAAGAGAATCTAATGATCGTTGGAGATGGAATCGATCGGACTGTCATCACTGGCGACCGTAGCGTGGTTGATGGTTGGACTACTTTCCAATCTGCAACTTTTGCTGTAATCGGAAAAGGATTTGTTGCGGTGAACATGACATTTCGCAACACCGCGGGATCCAGCAAGCATCAAGCAGTTGCAGTGAGAAACGGAGCAGACATGTCAGTTTTCTACAATTGTAGCTTCGAAGGTTACCAAGACACATTATACGCGCATTCCCTTAGACAATTCTACAAAAACTGCAACATTTACGGAACAGTTGATTTCATATTCGGCAACGCAGCAGCAGTATTCCAAAACTGCAACATGTATCCAAGACTCCCAATGCAAAATCAGTTCAATGCAATAACAGCACAGGGAAGAACAGATCCTAACCAAAACACAGGGTTCTCAATATGGAACTGTTACATTGTAGCAGCTAGTGAACTAGGAGGTGCAAATAGTAATTATAATGATATAAAAACATATTTGGGTAGGCCTTGGAAGGAGTATTCAAGGACAATTTATATGCAATGTTTTATTGATGGTTTGGTTGATCCTAAAGGTTGGATTGAATGGTTAGGGGATTTTGCATTAAGTACATTGTATTATGGAGAGTTTGGTAATTGGGGAGAAGGTTCAAGTACTAGTAATAGGGTCACATGGGAAGGGTACCATTTGATTGATGGAAAAGATGCTGATGAATTCACAGTTTACAAATTTATTCATGGGGACAAGTGGTTGCCTATGACTGGAGTGCCTTTCAGAGCTGGGTTTCAGTGA 1602 0.382 MKTSTTTLYIIIIFLLSPFLTSIISSQNTTCNTTPYPSFCKTTLPSDYLSIHEQTLFFLQQSLSITKTILQLISSYLNQSTIPNSTLLVLQDCLNLAELNTDLLSTVIETVSNSTNSDTNIFSNQVYDLQTLLSAVITNHQTCLDGFHDVNPYPRIRTTLSNPLSDGVKLYSTSLALFTHGWVSNDVTSSSIEKTITVNNRKLLQTSVDNVIVTQKVVVNPDGSGDFVTINDAVDAAPNKTGTNNEYHVIHVVAGVYSEYVSIGKNKENLMIVGDGIDRTVITGDRSVVDGWTTFQSATFAVIGKGFVAVNMTFRNTAGSSKHQAVAVRNGADMSVFYNCSFEGYQDTLYAHSLRQFYKNCNIYGTVDFIFGNAAAVFQNCNMYPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCYIVAASELGGANSNYNDIKTYLGRPWKEYSRTIYMQCFIDGLVDPKGWIEWLGDFALSTLYYGEFGNWGEGSSTSNRVTWEGYHLIDGKDADEFTVYKFIHGDKWLPMTGVPFRAGFQ 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05598 533 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Vivi1g05598 533 SMART PMEI_2 22 177 IPR006501 GO:0004857
Vivi1g05598 533 PANTHER PECTINESTERASE 14 522 - -
Vivi1g05598 533 Pfam Plant invertase/pectin methylesterase inhibitor 28 177 IPR006501 GO:0004857
Vivi1g05598 533 CDD PMEI-like_3 29 182 - -
Vivi1g05598 533 Pfam Pectinesterase 217 518 IPR000070 GO:0030599|GO:0042545
Vivi1g05598 533 SUPERFAMILY Pectin lyase-like 216 530 IPR011050 -
Vivi1g05598 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 180 IPR035513 -
Vivi1g05598 533 Gene3D - 210 532 IPR012334 -
Vivi1g05598 533 NCBIfam pectinesterase inhibitor domain 7 154 IPR006501 GO:0004857
Vivi1g05598 533 FunFam Pectinesterase 210 532 - -
Vivi1g05598 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 180 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05598 Vivi-Chr1 122985754 122987688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05598 8 532 Carbohydrate Esterase AT4G02330 52.273 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05598 K01051 - gmx:100810329 786.563