Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05592 ATGTCTTCTGAGCCGTTGATTCATCCGTCCGATAGAGGTTCATCGTTCCAGCAATGCGGCGAACCTCCGAGGATTTTCGAGGAATTGCCGAAAGCCAGTATCGTGTCCGTTTCGCGACCGGAGACCGGTGAAATAAGTCCGATTCTTCTTTCGTATACGATTGAATTGCAGTATAAACAGTTCAAGTGGCATTTAAGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTTGCATTGCGGAAGCGGGCCATAATTGAAGAATTTCATGACAAGCAAGAACAGGTAAAAGAGTGGCTTCATAGCTTAGGAATAGTAGATCAAACAGTAATGGTGCATGATGATGATGAACCTGATGATGGAGCTGTACCAATACATCATGAAGACAGTGTTAAAAACAGATATGTCCCATCAGTTGCTGCCCTATCAATAATCCGTCCGTCACTAGGGGGCCAACAATCGGTTGCAGACAGAGCCAAAGTTACAATGCAGAATTATTTGGATCTCTTTTTAGGAAACCTAGAGATTGTGAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCCAAGCTATCTTTTTTACAAGAGTATGGTCCAAAACTGAGAGAGGGATATGTAACGGTGAAGCATTTGTTAAATACTTCTCAGGATTCAGATGTAACTTGCTTTCCATGTCACTGGTTTCACTTTTGTGATAACAATTGGAAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCTTGCTGGATGATCCCTTCAACAACAAGCCACTGGATATAATTATGTTTGATGTCCTTCCATCTTCACCCGGAAAAGGAGAGACCAAAATATATTTAGCTGAACCTATAAAGGAACACAATCCTTTGCGTTACACATTTAAGGTTACTGGTGGAAACAGAAGTATATGCTTGAGAACTATCAGCAGTGCTAAAGTTCAAACTTGGGTTACTGCAATTAATGAAGCTGGTCTAAGACCTATGGAGGGTTGGTGTTATCCTCATCGCTTTGGTTCATTTGCTCCCACAAGAGGTTTGACTGTAGATGGGAGCCAAGCCCAATGGTTTGTAGATGGAGAAGCAGCATTTGAAGCAATTGCTTCTTCAATTCAAGATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGCCCAGAGCTCTACCTAAGGCGGCCTTTTGATAGTTTTCCTACCTGTAGGTTAGACTCTTTATTGGAAGAAAAGGCTAAACAAGGGGTTCAGATTTACGTGCTTCTCTACAAGGAGGTTTCTATAGCTTTGAAAATCAACAGCTTGTACAGTATGAGAAGACTGCTAAAAATTCATGAAAATGTGAGGGTATTACGCTCTCCCGACCATTTTGCTTCTCGTGTGTATTTATGGTCGCACCATGAAAAGCTTGTAATTATTGATTACAAGGTTTGCTTTCTTGGAGGATTAGATTTAAGCTTTGGACGATTTGACACACCTGAACACAAAGTGGGTGATAGCCCCTCTGTAATATGGCCCGGAAAGGACTATTACAATCCAAGAGAATCTGAACCAAACTCATGGGAAGACACCATGACAGATGAATTTGATCGCCAAAGATATCCACGTATGCCATGGCATGATGTCCATTGTGCTCTCTGGGGACCTCCCTGCCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAATCATGCTAAGAGAACTAAAGCTCCAAATGAAGATGAAATTCCTTTACTTATGCCTCACCATCACATGGTCATCCCACATTACATGGGAAGAAGCAAAGAGGTTGACATTGATGATAAGAAAGATGAAGACAACAAAAATGACATTGACAGGCTGGATTCATTGTCTTCACAATCTCCATTGCAAGATATACCGTTACTTTTACCTCAAGAAGCAGATGGAGCAGTTACTCCAAATGGTGATCATAGAAATTCCAGTGAAAGTTCTCCATTATTGTCCCAAAATCTGGAAGGTGAAACTTTAGTGTCAGATAACCAGAAGAAAGGGTTTCAAGATGAAGTTGTTCCTTTTAACTTTGAGCCTCAATGTGCTGTTGATGCTCTAGATGATTGGTGGGAAACACCAGAAGGTTCCAATGATGCCGCTACTTTGGAATATGGACAAGTTGGCCCACGTACTACTTGTCACTGTCAGGTAATCAGAAGTGTAAGCCAGTGGTCTGTTGGAACAAGTCAACCTGAAGAAAGCATTCACACTGCATATTGTTCTCTTATTGAAAAGGCAAAGCATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAATGGATGACACAATACAGAACCGTGTTTTGGAAGCAATATACAGGCGTATTTTGCAAGCTCACAAAGAACAGGAAGATTTTAGAGTCATAATTGTGATGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATAGTGGTGCTGCAACTGTGAGAGCCTTGACACATTGGCAGTATAGAACAATTTCTAGAGAAAGGCATTCCATATTACACAATCTTGAAGCTTTACTTGGTCGTAAGACACATGATTATATTTCCTTTTATGGTCTAAGATCTCATGGTAGGCTTTATCCAGATGGTCCTATGGCTACAAGTCAGGTATATGTGCACAGTAAGTTGATGATAATTGATGACCGTGTAGCTTTGATTGGATCATCTAATATAAATGACCGGAGTTTGCTTGGATCAAGAGATTCTGAGATTGGAGTGGTTATAGAGGACAAAGAATATGTTGAATCGTTGATGAATGGAAAGCCGTGGAAGGCTGGTAAATTTTCCCATAGCCTTCGCTGTTCCCTATGGTCTGAACATCTTGGCCTTCATACCGGAGAGATTAATAAAATCAATGATCCAGTGGCAGATTCAACTTACAAGGATTTGTGGTCAGCAACTGCAAAGGAAAATACAAGAATATACCATGAAGTCTTTTCTTGTATTCCCAATGATCAGATACACTCAAGAGCCACACTTCGGCAAAGCATGGTCCACTGGAAAGAAAAACTTGGCCAAACCACCATTGATTTGGGAATAGCCCCTGACAAGTTAATCTGTCACGAGAATGGAGAAAGAAAAATAATAGACCCAATAGATAGATTGAAGTCTATAAAGGGACATCTTGTTTCCTTTCCTTTGGATTTCATGTGTGAGGAAGATTTAAGACCAGCTGTTATTGAAAGTGAGTTTTATGTATCGCCTCAAGTATATCATTAA 3219 0.4094 MSSEPLIHPSDRGSSFQQCGEPPRIFEELPKASIVSVSRPETGEISPILLSYTIELQYKQFKWHLRKKASQVLYLQFALRKRAIIEEFHDKQEQVKEWLHSLGIVDQTVMVHDDDEPDDGAVPIHHEDSVKNRYVPSVAALSIIRPSLGGQQSVADRAKVTMQNYLDLFLGNLEIVNSREVCKFLEVSKLSFLQEYGPKLREGYVTVKHLLNTSQDSDVTCFPCHWFHFCDNNWKKVWAVLKPGFLALLDDPFNNKPLDIIMFDVLPSSPGKGETKIYLAEPIKEHNPLRYTFKVTGGNRSICLRTISSAKVQTWVTAINEAGLRPMEGWCYPHRFGSFAPTRGLTVDGSQAQWFVDGEAAFEAIASSIQDAKSEIFITGWWLCPELYLRRPFDSFPTCRLDSLLEEKAKQGVQIYVLLYKEVSIALKINSLYSMRRLLKIHENVRVLRSPDHFASRVYLWSHHEKLVIIDYKVCFLGGLDLSFGRFDTPEHKVGDSPSVIWPGKDYYNPRESEPNSWEDTMTDEFDRQRYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEDEIPLLMPHHHMVIPHYMGRSKEVDIDDKKDEDNKNDIDRLDSLSSQSPLQDIPLLLPQEADGAVTPNGDHRNSSESSPLLSQNLEGETLVSDNQKKGFQDEVVPFNFEPQCAVDALDDWWETPEGSNDAATLEYGQVGPRTTCHCQVIRSVSQWSVGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAMDDTIQNRVLEAIYRRILQAHKEQEDFRVIIVMPLLPGFQGGLDDSGAATVRALTHWQYRTISRERHSILHNLEALLGRKTHDYISFYGLRSHGRLYPDGPMATSQVYVHSKLMIIDDRVALIGSSNINDRSLLGSRDSEIGVVIEDKEYVESLMNGKPWKAGKFSHSLRCSLWSEHLGLHTGEINKINDPVADSTYKDLWSATAKENTRIYHEVFSCIPNDQIHSRATLRQSMVHWKEKLGQTTIDLGIAPDKLICHENGERKIIDPIDRLKSIKGHLVSFPLDFMCEEDLRPAVIESEFYVSPQVYH 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05592 1072 SMART pld_4 459 486 IPR001736 GO:0003824
Vivi1g05592 1072 SMART pld_4 868 895 IPR001736 GO:0003824
Vivi1g05592 1072 MobiDBLite consensus disorder prediction 638 653 - -
Vivi1g05592 1072 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g05592 1072 MobiDBLite consensus disorder prediction 1 17 - -
Vivi1g05592 1072 Pfam PLD-like domain 741 915 IPR025202 -
Vivi1g05592 1072 PIRSF PLD_euk 32 593 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vivi1g05592 1072 PIRSF PLD_euk 584 1072 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vivi1g05592 1072 FunFam Phospholipase 702 922 - -
Vivi1g05592 1072 Gene3D - 200 325 IPR011993 -
Vivi1g05592 1072 PANTHER PHOSPHOLIPASE D 155 1051 IPR015679 -
Vivi1g05592 1072 SUPERFAMILY Phospholipase D/nuclease 322 579 - -
Vivi1g05592 1072 Pfam Phospholipase D Active site motif 459 486 IPR001736 GO:0003824
Vivi1g05592 1072 SUPERFAMILY Phospholipase D/nuclease 707 918 - -
Vivi1g05592 1072 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 459 486 IPR001736 GO:0003824
Vivi1g05592 1072 Gene3D Endonuclease Chain A 345 582 - -
Vivi1g05592 1072 Gene3D Endonuclease Chain A 687 931 - -
Vivi1g05592 1072 CDD PLDc_vPLD1_2_yPLD_like_1 352 496 - -
Vivi1g05592 1072 ProSiteProfiles PH domain profile. 198 324 IPR001849 -
Vivi1g05592 1072 SUPERFAMILY PH domain-like 231 322 - -
Vivi1g05592 1072 CDD PLDc_vPLD1_2_yPLD_like_2 728 912 - -
Vivi1g05592 1072 CDD PH_PLD 176 322 - -
Vivi1g05592 1072 MobiDBLite consensus disorder prediction 631 653 - -
Vivi1g05592 1072 SMART PH_update 199 326 IPR001849 -
Vivi1g05592 1072 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 868 895 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05592 Vivi-Chr1 122865694 122876211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05592 24 1072 Phospholipase D Gene Family (Wang group) AT3G05630 66.195 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05592 K01115 - gmx:100796914 1875.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05592 1 122865694 122876211 Vivi1g05592 1 122865694 122876211 ECH