Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05588 ATGAGTGCAATACCGCAAGGTATAAGCAGGGAGGAATGGCTTCAAGCTTTGCCTCGGGCTCTAGTTGTTGCTTTTGTGAAAACTGACATGGAGTTCCAGAAAAAAGGAGAAACTTCTGGCACGACAGCTACGTTTGTTATCATTGATGGATGGACTGTTACAGTTGCATGTGTTGGGGATTCCCGATGCATATTAGATACCCAGGGAGGTGTTGTTTCTCTCTTGACTGTTGATCATAGATTGGAAGAAAATGTAGAAGAGAGGGAGCGTGTTACTGCCAGTGGCGGTGAAGTAGGAAGACTCAACATATTTGGAGGCAACGAGGTGGGGCCACTTCGCTGCTGGCCTGGTGGACTGTGCCTTTCTAGATCAATTGGCGACACCGATGTGGGAGAGTATATCGTTCCAATACCACATGTTAAGCAAGTGAAGCTTTCAACTGCCGGTGGAAGGCTTATCATAGCTTCTGATGGTATTTGGGATACTTTGTCTTCTGATATGGCTGCCAAGGCATGTCGGGGTGTACCTGCAGAGCTTGCTGCCAAGCTGGTGGTTAAGGAAGCTCTTAGGTCAAGAGGGCTGAAGGATGATACAACATGCCTTGTTGTAGATATTATTCCTTCGGACTATCCTTTATCGCCTATGCCATCAACTCCTAGAAAGAAATCTAACATGCTAAGTTCACTTCTCTTTAGAAAGAAATCTCAAAACTCGACAAACAAAGGAACTAATAAGCTTTCTGCAGTTGGTGTTGTAGAAGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGCTAGGTAAGGATGTTTCTTCTAATACGAATTCTGGTATATACCGCTGTGCGGTTTGTCTAGCAGATCAACCCTCTAGCAATGGTTTATCAACGAACACGGATCATTTTATCACGCCAGTATCTAAACCACGGGAAGGTCTATTCCTCTGCACAATCTGTCAGAAGAAGAAAGACGCAATGGAAGGAAAAAGGTCATGA 996 0.4458 MSAIPQGISREEWLQALPRALVVAFVKTDMEFQKKGETSGTTATFVIIDGWTVTVACVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSTAGGRLIIASDGIWDTLSSDMAAKACRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPLSPMPSTPRKKSNMLSSLLFRKKSQNSTNKGTNKLSAVGVVEELFEEGSAMLTERLGKDVSSNTNSGIYRCAVCLADQPSSNGLSTNTDHFITPVSKPREGLFLCTICQKKKDAMEGKRS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05588 331 PANTHER PROTEIN PHOSPHATASE 15 204 IPR015655 GO:0004722|GO:0006470
Vivi1g05588 331 SUPERFAMILY PP2C-like 11 205 IPR036457 -
Vivi1g05588 331 CDD PP2Cc 9 205 IPR001932 -
Vivi1g05588 331 FunFam Calmodulin-binding protein phosphatase 1 210 - -
Vivi1g05588 331 Gene3D - 2 209 IPR036457 -
Vivi1g05588 331 SMART PP2C_4 1 203 IPR001932 -
Vivi1g05588 331 Pfam Protein phosphatase 2C 17 189 IPR001932 -
Vivi1g05588 331 ProSiteProfiles PPM-type phosphatase domain profile. 1 205 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05588 Vivi-Chr1 122705522 122707870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05588 1 330 PP2C-type Phosphatase Gene Family AT1G09160 77.273 0.0 506