Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05587 ATGAGTGAGACTGAATTATCAGGGATGAAGCAACCACTTGTTCCGTTAGCGACTCTGATTGGCCGGGAGCTACGCAATGGAAAAGCTGAGAAACCTTTTGTGAAGTATGGTCAGGCTGGTTTGGCAAAGAAAGGAGAAGATTACTTTCTAATCAAGACAGATTGTCAGAGGGTTCCCGGTGATTCTTCAACGATGTTTTCTGTCTTTGCGATCCTTGATGGGCATAATGGTATATCCGCTGCTATTTTTGCAAAGGAAAACATAATAAACAATGTCATGAGTGCAATACCGCAAGGTATAAGCAGGGAGGAATGGCTTCAAGCTTTGCCTCGGGCTCTAGTTGTTGCTTTTGTGAAAACTGACATGGAGTTCCAGAAAAAAGGAGAAACTTCTGGCACGACAGCTACGTTTGTTATCATTGATGGATGGACTGTTACAGTTGCATGTGTTGGGGATTCCCGATGCATATTAGATACCCAGGGAGGTGTTGTTTCTCTCTTGACTGTTGATCATAGATTGGAAGAAAATGTAGAAGAGAGGGAGCGTGTTACTGCCAGTGGCGGTGAAGTAGGAAGACTCAACATATTTGGAGGCAACGAGGTGGGGCCACTTCGCTGCTGGCCTGGTGGACTGTGCCTTTCTAGATCAATTGGCGACACCGATGTGGGAGAGTATATCGTTCCAATACCACATGTTAAGCAAGTGAAGCTTTCAACTGCCGGTGGAAGGCTTATCATAGCTTCTGATGGTATTTGGGATACTTTGTCTTCTGATATGGCTGCCAAGGCATGTCGGGGTGTACCTGCAGAGCTTGCTGCCAAGCTGGTGGTTAAGGAAGCTCTTAGGTCAAGAGGGCTGAAGGATGATACAACATGCCTTGTTGTAGATATTATTCCTTCGGACTATCCTTTATCGCCTATGCCATCAACTCCTAGAAAGAAATCTAACATGCTAAGTTCACTTCTCTTTAGAAAGAAATCTCAAAACTCGACAAACAAAGGAACTAATAAGCTTTCTGCAGTTGGTGTTGTAGAAGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGCTAGGTAAGGATGTTTCTTCTAATACGAATTCTGGTATATACCGCTGTGCGGTTTGTCTAGCAGATCAACCCTCTAGCAATGGTTTATCAACGAACACGGATCATTTTATCACGCCAGTATCTAAACCACGGGAAGGTCTATTCCTCTGCACAATCTGTCAGAAGAAGAAAGACGCAATGGAAGGAAAAAGGTCATGA 1272 0.441 MSETELSGMKQPLVPLATLIGRELRNGKAEKPFVKYGQAGLAKKGEDYFLIKTDCQRVPGDSSTMFSVFAILDGHNGISAAIFAKENIINNVMSAIPQGISREEWLQALPRALVVAFVKTDMEFQKKGETSGTTATFVIIDGWTVTVACVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSTAGGRLIIASDGIWDTLSSDMAAKACRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPLSPMPSTPRKKSNMLSSLLFRKKSQNSTNKGTNKLSAVGVVEELFEEGSAMLTERLGKDVSSNTNSGIYRCAVCLADQPSSNGLSTNTDHFITPVSKPREGLFLCTICQKKKDAMEGKRS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05587 423 SMART PP2C_SIG_2 50 297 IPR001932 -
Vivi1g05587 423 PANTHER PROTEIN PHOSPHATASE 46 296 IPR015655 GO:0004722|GO:0006470
Vivi1g05587 423 SMART PP2C_4 23 295 IPR001932 -
Vivi1g05587 423 FunFam probable protein phosphatase 2C 5 35 302 - -
Vivi1g05587 423 Pfam Protein phosphatase 2C 64 281 IPR001932 -
Vivi1g05587 423 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Vivi1g05587 423 CDD PP2Cc 43 297 IPR001932 -
Vivi1g05587 423 Gene3D - 33 301 IPR036457 -
Vivi1g05587 423 ProSiteProfiles PPM-type phosphatase domain profile. 25 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05587 Vivi-Chr1 122704902 122707870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05587 1 422 PP2C-type Phosphatase Gene Family AT1G09160 76.066 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05587 - - gmx:100791944 719.539