Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g05581 | ATGTCGTATCGTCCAACTGCAAACTCCAGGACCGAGGTCCGTCGCAATCGATACAAAGTCGCCGTCGATGCCGAAGAAGGCCGCCGACGCCGTGAGGACACCATGGTTGAGATCCGCAAGAATCGTAGGGAAGAGAGTTTGCTCAAAAAGAGACGCGAGGGTCTTCAACCTCAGCAGATTCCTTCCTCCATTCACTCCGTCGTAGAGAAGAAGTTGGAAAATTTACCATCCATGGTTGCTGGTGTTTGGAGTGATGATAATAATTTGCAGCTTGAGTCAACAACTCAGTTTCGAAAGCTGCTTTCTATTGAACGTACTCCACCGATTGAGGAGGTTATACAGACGGGTGTTGTTTCTCGTTTTGTTGAGTTTTTGATGAGGGAGGATTTTCCACAGTTGCAGTTTGAGGCAGCTTGGGCCTTGACAAATATAGCTTCTGGAACGTCTGAAAACACCAAAGTGGTAATTGACCATGGCGCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTTCTAGTGACGATGTCCGTGAACAGGCAGTTTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAAATGTCGTGATCTTGTTCTCGGCCAGGGGGCTTTGATTCCTCTTTTGGCACAATTGAATGAACATGCCAAGCTTTCTATGCTGAGAAATGCTACTTGGACACTTTCAAACTTCTGCAGAGGCAAGCCACAGCCCCCTTTTGATCAGGTTAAACCTGCACTTCCTGCCCTTGCTGGTCTTATTCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGCTGGGCACTTTCATATCTTTCTGACGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTGGAGCTTCTACTGCACCCATCTCCTTCAGTGTTGATTCCTGCTCTTCGCACTGTTGGAAACATAGTCACTGGAGATGATATGCAAACTCAGGTTATCATCAATCACCAGTCTCTTCCTTGCTTATTTAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATTACAGCTGGGAATAAACAACAGATTCAGGCTGTGATTGAGGCCAATATATTCGGTCCTTTGGTGACCCTGCTTCAAAATGCTGAGTTTGATATTAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGATCTCACGAACAAATCAAGTACCTAGTAGAGCAAGGGTGTATTAAGCCATTGTGTGATCTTCTTATCTGTCCGGATCCTAGAATTGTGACAGTTTGTCTGGAAGGGCTTGAAAACATCTTGAAGGTTGGAGAAGCTGATAAAAATATTGGCAACACTGGTGACGTGAATCTCTATGCCCAATTGATTGATGATGCCGAGGGGTTGGAGAAAATTGAAAACCTCCAGAGTCACGACAACACTGAGATTTATGAGAAGGCTGTGAAGCTTCTTGAGACATACTGGTTGGAGGAAGAAGATGAAACTATGCCTCCAGGGGATGCTTCTCAAGGAGGATTCAACTTTGGTAGCACTGATGTTCCTTCTGTGCCTTCTGGAGGGTTCAACTTCAATCAGTAG | 1599 | 0.4465 | MSYRPTANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQIPSSIHSVVEKKLENLPSMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQAVWALGNVAGDSPKCRDLVLGQGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQSLPCLFNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIFGPLVTLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVEQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQLIDDAEGLEKIENLQSHDNTEIYEKAVKLLETYWLEEEDETMPPGDASQGGFNFGSTDVPSVPSGGFNFNQ | 532 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g05581 | 532 | PIRSF | Importin_alpha | 5 | 530 | IPR024931 | GO:0005737|GO:0006606|GO:0061608 | |
| Vivi1g05581 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 243 | 285 | IPR000225 | GO:0005515 | |
| Vivi1g05581 | 532 | Pfam | Importin beta binding domain | 14 | 95 | IPR002652 | GO:0006606|GO:0061608 | |
| Vivi1g05581 | 532 | PANTHER | IMPORTIN ALPHA | 14 | 501 | - | - | |
| Vivi1g05581 | 532 | SUPERFAMILY | ARM repeat | 14 | 500 | IPR016024 | - | |
| Vivi1g05581 | 532 | FunFam | Importin subunit alpha | 73 | 496 | - | - | |
| Vivi1g05581 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 159 | 201 | IPR000225 | GO:0005515 | |
| Vivi1g05581 | 532 | Gene3D | - | 13 | 52 | IPR036975 | GO:0006606 | |
| Vivi1g05581 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 116 | 159 | IPR000225 | GO:0005515 | |
| Vivi1g05581 | 532 | Pfam | Atypical Arm repeat | 457 | 503 | IPR032413 | - |
Showing 1 to 10 of 29 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi1g05581 | K15042 | - | gmx:100789135 | 993.03 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vivi1g05581 | 1 | 122612009 | 122616913 | Vivi1g05581 | 1 | 122612009 | 122616913 | ECH | |
| Vivi6g04854 | 6 | 152436863 | 152441340 | Vivi1g05581 | 1 | 122612009 | 122616913 | ECH | |
| Vivi1g05581 | 1 | 122612009 | 122616913 | Vivi6g04854 | 6 | 152436863 | 152441340 | ECH | |
| Vivi4g02828 | 4 | 133928559 | 133932772 | Vivi1g05581 | 1 | 122612009 | 122616913 | ECH | |
| Vivi6g04854 | 6 | 152436863 | 152441340 | Vivi1g05581 | 1 | 122612009 | 122616913 | PCT |
Showing 1 to 5 of 5 entries