Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05575 ATGGAAAAAGGAAGCAGTAGCAGGAAGAACAACAACCAGAATCAACAAGATCACGATTTAGAGCTAGAGAAAGTTCGCTTAATCAGTCTAGCTCTCGAGTTCGGTTTCGATGAACAATCCGCTAACCAATGTTTCGACCGTCTCGTCTCTCTCTACGGCGATGACGGTCGTGATTTCATCACCGTTGAGCACTGCGGCGACGATTTTCTTACTGCTTTGGCGGAATCGGTGCAAGACACGGAGGAGTGGGATGATTTACGCGAAATGGAATCGCAGGCTGTTGGAACTTTGAATCACGTGCTTGAAGAACGGTTTGCCACGTGCGGTGAAGGTTCTAAGTCATTCGTTGATGTAATTGACGATTCGCCTCAGAAAGGGCGGACCAAATTTGTTGAATTGGGTGATGAGGAGGATACAAGGGGTAATTCTGTATTTTCGGGTCAACATACTCGAAACTCGATGGATGGCAGAAGTTCCATCACTCAAGGCTCAGTTTCATCAACTTCCAGAAAAGTACAATCCTCCTTTGCTTCAAAGGATAGAACTAGTACTCTCACTTATGAAGAATTACAGGCGCTAGATGATATTGAATTGGCAAATGTTGTTATCTTTGGTAATAAAACACTTCGACCGTTGCAGCATCAAGCATGTGAAGCAACATTGTCAAAACAAGATTCTTTTATTCTTATGCCTACTGGAGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACAGTAGTTATATCTCCCTTACTTTCACTCATTCAAGATCAGATAATAACACTTAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAACTCACAACAAAATGCTTCCCAAGCCGCAGCTGTCCTCCAAGAGCTAAGAAAAGACAAGCCTACGTGCAAGCTCTTGTATGTGACACCGGAGAGAATTGCGGGAAACCAAACATTTCTTGGGATTCTAAAATGCATGAATCAGAAGGGACAGCTGGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAGTGGGGACATGATTTCCGGCCTGATTATCGCGCATTAGGATCTCTTAAGCTAAACTTTCCACATGTACCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTTCGCAAGGACATCTTAAATGCTTTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTGATTGGTAAGACAAAGGAACCACTAAAGCAGCTTGGAAAACTACTAATGGATCGTTTCAAGAGTCAGTGCGGCATTGTATACTGCCTGTCAAAGAGTGAATGTGTCGAGGTATCAAAGTTTTTGAATGAGAAATGTAAAATTAAGGCAGCATATTACCATGCTGGTTTGGCTGTCAAACAGAGAGTTACTGTTCAAAAGAAATGGCATGACGGAGAGGTCCATATAGTATGTGCAACTATTGCTTTTGGAATGGGAATAGACAAACCTGATGTTCGATTTGTCATCCATAATACAATGTCAAAATCAATTGAAAGCTATTATCAGGAATCAGGAAGGGCTGGAAGAGATAATCTTCCTGCAGTTTGCATTGCTCTATATCAGAAGAAAGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAGGGTTTTAAGACAGCAATGGCTCAAGCCAAAATGATGCAACAGTACTGTGAATTAAAGGATGAATGCCGGAGACAGACCCTACTCAAACACTTCGGAGAATCATTCGATAGAAAGACCTGCAAGCATGGCTCTAGCCCTTGTGATAACTGTCTCAAGACCACATAA 1830 0.4202 MEKGSSSRKNNNQNQQDHDLELEKVRLISLALEFGFDEQSANQCFDRLVSLYGDDGRDFITVEHCGDDFLTALAESVQDTEEWDDLREMESQAVGTLNHVLEERFATCGEGSKSFVDVIDDSPQKGRTKFVELGDEEDTRGNSVFSGQHTRNSMDGRSSITQGSVSSTSRKVQSSFASKDRTSTLTYEELQALDDIELANVVIFGNKTLRPLQHQACEATLSKQDSFILMPTGGGKSLCYQLPATLQPGVTVVISPLLSLIQDQIITLNLKFGIPATFLNSQQNASQAAAVLQELRKDKPTCKLLYVTPERIAGNQTFLGILKCMNQKGQLAGFVVDEAHCVSQWGHDFRPDYRALGSLKLNFPHVPVMALTATATHPVRKDILNALRIPHAIVLERSFDRPNLKYEVIGKTKEPLKQLGKLLMDRFKSQCGIVYCLSKSECVEVSKFLNEKCKIKAAYYHAGLAVKQRVTVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKEGFKTAMAQAKMMQQYCELKDECRRQTLLKHFGESFDRKTCKHGSSPCDNCLKTT 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05575 609 Pfam RecQ zinc-binding 537 606 IPR032284 -
Vivi1g05575 609 CDD SF2_C_RecQ 401 534 - -
Vivi1g05575 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 567 IPR001650 -
Vivi1g05575 609 NCBIfam RecQ family ATP-dependent DNA helicase 203 608 IPR004589 GO:0004386|GO:0006310
Vivi1g05575 609 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 332 341 IPR002464 -
Vivi1g05575 609 CDD DEXHc_RecQ 203 400 - -
Vivi1g05575 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 393 IPR014001 -
Vivi1g05575 609 MobiDBLite consensus disorder prediction 141 175 - -
Vivi1g05575 609 FunFam ATP-dependent DNA helicase 190 400 - -
Vivi1g05575 609 Pfam Helicase conserved C-terminal domain 418 524 IPR001650 -
Vivi1g05575 609 Gene3D - 166 400 IPR027417 -
Vivi1g05575 609 Pfam DEAD/DEAH box helicase 211 380 IPR011545 GO:0003676|GO:0005524
Vivi1g05575 609 MobiDBLite consensus disorder prediction 138 175 - -
Vivi1g05575 609 FunFam ATP-dependent DNA helicase 401 608 - -
Vivi1g05575 609 Gene3D - 401 609 IPR027417 -
Vivi1g05575 609 SMART helicmild6 443 525 IPR001650 -
Vivi1g05575 609 SMART ultradead3 205 409 IPR014001 -
Vivi1g05575 609 PANTHER DNA HELICASE RECQ FAMILY MEMBER 190 606 - -
Vivi1g05575 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 546 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05575 Vivi-Chr1 122570462 122575587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05575 423 523 Eukaryotic Initiation Factors Gene Family AT5G11170 32.673 3.87e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05575 K10899 - gmx:100806070 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05575 1 122570462 122575587 Vivi1g05575 1 122570462 122575587 ECH