Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05570 ATGAGTGGTGAGGAAGATACAAAAAGAAAGAAGAGAATCGTCATAATATGCACCTCAAGCTTTTTACTAGTGGCTATGGTGGTTGCTGTGACCGTTGGCGTGAATAATAGCGATGGTGTCAACGGCCAAAGTCGCATAAGTTCAACCCAGAAAGCCGTGAAAACCTTTTGTAGTCCAACAAGTTTTAAAAAAGATTGCGAGGAAAATCTATTGGCAGAAGTAGGCAGCACAACAGACTCAAAAGAACTCATGAAATTGGCTTTCAATATCACCGTTGCGAAGATCAGAAAAGGAATTGAGAAAACAGGTCTCTTGGAAGATGTTGAGAAGGAACCTAGGGCAAAAATGGCTCTTGATACATGCAAGAAGCTAATGGATCTTTCTATCGGAGAACTCCAAAGGTCAATCGAGGGAATAACAAGTTTTAATATCAACAATCTAGAAAGCATTCTCGTGAGTTTAAGAGTTTGGTTAACCGGTGCAATGACATATCAAGAAACATGTTTAGATGGTTTTGCGAACATCACTAGTGAAGCTGGTACGAAGATGAAACACATTTTAAGACTTTCGAAGCGTATGAGTAGTAATGCACTTGACGTTGTTACGGACTTGGAAAACGCTGTGAAGGATATTAATGTAACAAAAGATGAACGTCGTCTGTTTGAAGATTATAAAAGCTCCTACGTTGGCGAACAAGTTGGTCATGATGATGTTAACGAGGTTCCTTCTTGGGTTGGTGATGGTTCGAGTGCTGGTGTTCGTAGACTCCTTCAAGTTGCTCAAAATAAACTCAAGGCGAATGTGGTTGTGGCTCAAGATGGTAGTGGAAAGTTTAGGACTATCAATGAAGCTTTGAAGCTAGTGCCAGTAAATGGCCAAAAACCTTTTGTTATTTATATCAAGCAAGGTGTTTATCGCGAGTATGTTGACATTACCATACTAATGACTAATGTTGTGCTCGTTGGTGATGGTGATACGAAAACAATAATTAGTGGCAACAAAAACATGGCAGATGGAATTGCAACTTATGCAACCCCTACTCTTGCTGTTGGAGCAGATTATTTTGTTGCAATGAGCATAGGAATTGAGAATACAGCAGGACTCCTAAAACAACAAGCTTGCGCCTTAAGAGTCCAAGGCGACAAGGCAATTTTTTACCAATGTTCAATACACGGATATCAAGACACATTATATGCACACACTATGCGTCAGTTTTATCGCGATTGTACGGTTTCAGGCACGATTGATTTTGTGTTTGGCAACGCGCAAGCCGTTTTCCAGAACTGCACATTCATAGTTAGAAAACCACTAGATATGCAACAATGCATTATAGTTGCACAATCCAGAACAGAGGAAAACCAACCATCAGGAATAGTAATTCAAGGTAGCCGCATTGTCTCTGATCCTCCAGATGCTCCAGCCACCTACAAAGCTTATCTCGGCCGTCCGTGGAAGAATTTCGCGAGGACTATTGTCATGGATACTTACATTGGAGAGGTGATTCAGCCTGAGGGGTTTATGCCATGGGAAGAACCGGATAAACGACTTACTGGAATGGACACTTGTTATTATGCTGAGGTTAATAATACTGGTCCTGGTTCTGATAAATCAAAGCGCGTAAAATGGCCTGGGATTAAGAACCTTACACCTGAATCTGCACATGCTTTCGATCCAGGTTTGTTCTTTCAGGGAGATGATTGGATTAAGAATACTAAAATTCCATACTCTTCTGGCAGCATGGCAGCCCCAAAACCAAAGCAGCCAACCCCACAGAAGTCAACCCCCCAGAAGGCCCAGCCGCCAACCCCACAGCAGACAACCCCCCAGAAGACCCAGCCGCCAACCCCACAGCAGACAACCCCCCAGAAGACCCAGCCACCAACCCAACAGCAGACAACCCCCCAGAAGACCCAGCCGCCAACCCAACAACAGCCATTCTTTCCAAACCCAAAGTTTTAA 1959 0.4308 MSGEEDTKRKKRIVIICTSSFLLVAMVVAVTVGVNNSDGVNGQSRISSTQKAVKTFCSPTSFKKDCEENLLAEVGSTTDSKELMKLAFNITVAKIRKGIEKTGLLEDVEKEPRAKMALDTCKKLMDLSIGELQRSIEGITSFNINNLESILVSLRVWLTGAMTYQETCLDGFANITSEAGTKMKHILRLSKRMSSNALDVVTDLENAVKDINVTKDERRLFEDYKSSYVGEQVGHDDVNEVPSWVGDGSSAGVRRLLQVAQNKLKANVVVAQDGSGKFRTINEALKLVPVNGQKPFVIYIKQGVYREYVDITILMTNVVLVGDGDTKTIISGNKNMADGIATYATPTLAVGADYFVAMSIGIENTAGLLKQQACALRVQGDKAIFYQCSIHGYQDTLYAHTMRQFYRDCTVSGTIDFVFGNAQAVFQNCTFIVRKPLDMQQCIIVAQSRTEENQPSGIVIQGSRIVSDPPDAPATYKAYLGRPWKNFARTIVMDTYIGEVIQPEGFMPWEEPDKRLTGMDTCYYAEVNNTGPGSDKSKRVKWPGIKNLTPESAHAFDPGLFFQGDDWIKNTKIPYSSGSMAAPKPKQPTPQKSTPQKAQPPTPQQTTPQKTQPPTPQQTTPQKTQPPTQQQTTPQKTQPPTQQQPFFPNPKF 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05570 652 ProSitePatterns Pectinesterase signature 1. 292 311 IPR018040 -
Vivi1g05570 652 MobiDBLite consensus disorder prediction 598 640 - -
Vivi1g05570 652 Pfam Pectinesterase 267 565 IPR000070 GO:0030599|GO:0042545
Vivi1g05570 652 NCBIfam pectinesterase inhibitor domain 40 202 IPR006501 GO:0004857
Vivi1g05570 652 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 204 IPR035513 -
Vivi1g05570 652 MobiDBLite consensus disorder prediction 573 652 - -
Vivi1g05570 652 Gene3D - 261 579 IPR012334 -
Vivi1g05570 652 PANTHER PECTINESTERASE 19 571 - -
Vivi1g05570 652 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 206 IPR035513 -
Vivi1g05570 652 Pfam Plant invertase/pectin methylesterase inhibitor 52 199 IPR006501 GO:0004857
Vivi1g05570 652 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Vivi1g05570 652 CDD PMEI-like_3 55 202 - -
Vivi1g05570 652 FunFam Pectinesterase 49 205 - -
Vivi1g05570 652 SUPERFAMILY Pectin lyase-like 265 577 IPR011050 -
Vivi1g05570 652 SMART PMEI_2 48 200 IPR006501 GO:0004857
Vivi1g05570 652 MobiDBLite consensus disorder prediction 573 587 - -
Vivi1g05570 652 FunFam Pectinesterase 261 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05570 Vivi-Chr1 122448838 122451625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05570 4 593 Carbohydrate Esterase AT3G05610 44.574 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05570 K01051 - gmx:100794799 674.085