Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05569 ATGAAAACATCAACAACTACCCTATACATTATCATCATCTTCTTCCTCTCTCCATTTCTAGCTTCCATCATTTCCTCCCAAAACACCACATGCAACAATACACCCTACCCATCATTCTGCAAATCTACTCTACCTTCTGATTATTTATCTATACATGAACAAACCCTTTTCTTCCTTCAACAATCCTTATCAATCACCAAAACCATTCTTCAACTAATCTCATCTTATCTTAACCAATCCACCATTCCAAATTCCACTTTACTTGTCCTTCAAGATTGTCTTAATCTTGCTGAACTAAACACTGATCTCTTATCCACTGTCATAGAAACCATTAGTAATAGTAGTGATAGTAATATTAATATATTTAGTAATCAAGTTTATGATTTGCAAACCTTGCTTAGTGCTGTAATAACCAATCATCAAACATGTTTAGATGGTTTTCATGATGTGAATCCTTATCCAAGAATTAGAACTACCTTGTCAAATCCTCTTTCTGATGGGGTCAAACTATATAGCACATCTCTTGCTCTTTTCACTCATGGTTGGGTTAGCAATGATGTTATAAGTTCATCAATAGAGAAAACAATTACAATGAATAACAGGAAGTTGTTGCAAACAAGTGTTGACAATGTAATAGTGACACAAAAAGTGGTTGTTAACCCAGATGGATCTGGAGATTTTGTTACCATAAATGATGCTGTGGATGCTGCACCTAATACAACAGGCTCCAACAATGGTTATCATGTAATTTATGTTGTAGCCGGGATTTATAATGAGTATGTTTCTATTGCTAAGAATAAAGAGAATCTAATGATCATCGGAGATGGAATCGATCGGACTGTCATCACTGGCGACCGTAGCGTGGTTGATGGTTGGACTACTTTCCAATCTGCAACTTTTGCTGTAATCGGAAAAGGATTTGTTGCGGTGAACATGTCATTTCGCAACACAGCGGGACCTAACAAGCATCAAGCAGTTGCAGTAAGAAACGGAGCAGACATGTCAGTTTTCTACAATTGCAGCTTCGAAGGTTACCAAGACACATTATACGCGCATTCCCTTAGACAATTCTACAAAAACTGCAACATTTACGGAACAGTTGATTTCATATTCGGCAACGCAGCAGCAGTATTCCAAAACTGCAACATGTATCCAAGACTCCCAATGCAAAATCAGTTCAATGCAATTACAGCACAAGGAAGAACAGATCCTAACCAAAACACAGGGTTCTCAATATGGAACTGTTACATTGTAGCAGCCAGTGAACTAGGGGGTGCAAATAGTAATTATAATGATATAAAGACATATTTGGGTAGGCCTTGGAAGGAGTATTCAAGGACAATTTATATGCAATGTTTTATTGATGGTTTGGTTGATCCTAAAGGTTGGATTGAATGGTTAGGGGATTTTGCATTGAGTACATTGTATTATGGAGAGTTTGGTAATTGGGGAGAAGGTTCAAGTACTAGTAATAGGGTCACATGGGAAGGGTACCATTTGATTGATGGAAAAGATGCTGATGAATTCACAGTTTATAAATTTATTCATTGTTTAATACGATATGAAGATATTGTTACCGGTTGGAATTTAACTAGTTTCATATTCAATAGGAATAAGTTAAGTGATAAAATACTATATAAAAGAGAGCAACTCAAGTACTTACGAAGACTATAA 1674 0.3626 MKTSTTTLYIIIIFFLSPFLASIISSQNTTCNNTPYPSFCKSTLPSDYLSIHEQTLFFLQQSLSITKTILQLISSYLNQSTIPNSTLLVLQDCLNLAELNTDLLSTVIETISNSSDSNINIFSNQVYDLQTLLSAVITNHQTCLDGFHDVNPYPRIRTTLSNPLSDGVKLYSTSLALFTHGWVSNDVISSSIEKTITMNNRKLLQTSVDNVIVTQKVVVNPDGSGDFVTINDAVDAAPNTTGSNNGYHVIYVVAGIYNEYVSIAKNKENLMIIGDGIDRTVITGDRSVVDGWTTFQSATFAVIGKGFVAVNMSFRNTAGPNKHQAVAVRNGADMSVFYNCSFEGYQDTLYAHSLRQFYKNCNIYGTVDFIFGNAAAVFQNCNMYPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCYIVAASELGGANSNYNDIKTYLGRPWKEYSRTIYMQCFIDGLVDPKGWIEWLGDFALSTLYYGEFGNWGEGSSTSNRVTWEGYHLIDGKDADEFTVYKFIHCLIRYEDIVTGWNLTSFIFNRNKLSDKILYKREQLKYLRRL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05569 557 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Vivi1g05569 557 NCBIfam pectinesterase inhibitor domain 7 154 IPR006501 GO:0004857
Vivi1g05569 557 Gene3D - 210 523 IPR012334 -
Vivi1g05569 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 180 IPR035513 -
Vivi1g05569 557 FunFam Pectinesterase 210 525 - -
Vivi1g05569 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 180 IPR035513 -
Vivi1g05569 557 CDD PMEI-like_3 29 182 - -
Vivi1g05569 557 Pfam Pectinesterase 217 516 IPR000070 GO:0030599|GO:0042545
Vivi1g05569 557 Pfam Plant invertase/pectin methylesterase inhibitor 28 177 IPR006501 GO:0004857
Vivi1g05569 557 SUPERFAMILY Pectin lyase-like 216 515 IPR011050 -
Vivi1g05569 557 SMART PMEI_2 22 177 IPR006501 GO:0004857
Vivi1g05569 557 PANTHER PECTINESTERASE 13 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05569 Vivi-Chr1 122423701 122425608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05569 8 515 Carbohydrate Esterase AT4G02330 52.260 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05569 K01051 - gmx:100810329 748.814