Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05553 ATGGAAGATATTTACAATATCAACAAGATGAATCTCCCTTTTGTATCCTCTCCACAGAACGTTAACGTTAACGTTTCTTCTTATACTCCTGCAACCACTACTTCAGAATTGCATCTAGGACTCGTCCGCGCTGTTACCAATAATAACTACCACCATCAACCGGATCTAATCGGGTCGGATATATCGGATCGGATCATCAAAAACCAGATCGCAACTCATCCTCTTTATCCAAATCTACTATCTGCTTTCATAGAATGCCAAAAGGTTGGAGCACCGACTGAACTTGCATCTCTTCTCGAAGAAATAGGCCGTGAAAGCCACCACACCAATGTTCTCCGTCAGATAGGAGATGATCCTGACCTTGATCAATTCATGGAATCATACTGTGAAGTTCTTCATAGATACAAAGAGGAGTTATCGAAACATTTAAACGAAGCGAGTTTGTTTCTGTGTGATATCGAATCACAACTAAGCCAACTTTGCAAGGGGACATTAACAATCTCATCTGATAATAACAACAACCGTTCAGATGAAGCTGCAGGGACATCAGAGGATGAAATGAGCTGTGCAAAGGTTGAAGCAGTTGAAGGTATTCATGAACATTGTGGCACATCATGTCCAGGTGACAAAGAGCTTAAACAAATGCTGCTTCGTAAATATGGAGGTTATCTTAGTAACTTGAGAAAGGAGTTTCTTAAGAAAAGGAAAAAGGGTAAACTACCAAAGGATGCAAGAATGGCATTGCTGGATTGGTGGAACATTCACTATAGATGGCCTTACCCCACGGAGGAGGAGAAAATGCAGCTATCTGAAATGACAGGACTTGATATAAAACAGATAAATAACTGGTTCATCAATCAGAGGAAAAGACACTGGAAACCATCTGAAGATATGAGATTTGCGATTATTGAGGGTGTAACTAGCACCGGCGGAGAAGGACCTCTATAA 948 0.4082 MEDIYNINKMNLPFVSSPQNVNVNVSSYTPATTTSELHLGLVRAVTNNNYHHQPDLIGSDISDRIIKNQIATHPLYPNLLSAFIECQKVGAPTELASLLEEIGRESHHTNVLRQIGDDPDLDQFMESYCEVLHRYKEELSKHLNEASLFLCDIESQLSQLCKGTLTISSDNNNNRSDEAAGTSEDEMSCAKVEAVEGIHEHCGTSCPGDKELKQMLLRKYGGYLSNLRKEFLKKRKKGKLPKDARMALLDWWNIHYRWPYPTEEEKMQLSEMTGLDIKQINNWFINQRKRHWKPSEDMRFAIIEGVTSTGGEGPL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05553 315 SUPERFAMILY Homeodomain-like 233 300 IPR009057 -
Vivi1g05553 315 CDD homeodomain 243 295 IPR001356 GO:0003677
Vivi1g05553 315 Gene3D - 229 301 - -
Vivi1g05553 315 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Vivi1g05553 315 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Vivi1g05553 315 Pfam KNOX2 domain 114 161 IPR005541 GO:0003677|GO:0005634
Vivi1g05553 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 301 - -
Vivi1g05553 315 SMART ELK_2 211 232 IPR005539 GO:0003677
Vivi1g05553 315 SMART KNOX2_2 111 162 IPR005541 GO:0003677|GO:0005634
Vivi1g05553 315 Pfam KNOX1 domain 66 107 IPR005540 GO:0003677|GO:0005634
Vivi1g05553 315 ProSiteProfiles ELK domain profile. 211 231 IPR005539 GO:0003677
Vivi1g05553 315 Pfam ELK domain 211 232 IPR005539 GO:0003677
Vivi1g05553 315 SMART KNOX1_2 64 108 IPR005540 GO:0003677|GO:0005634
Vivi1g05553 315 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Vivi1g05553 315 SMART HOX_1 233 298 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05553 Vivi-Chr1 121977062 121981370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05553 34 309 Homeobox Transcription Factor Family AT1G23380 47.038 2.15e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi1g05553 KNOX2 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05553 - - mtr:11406488 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05553 1 121977062 121981370 Vivi1g05553 1 121977062 121981370 ECH
Vivi3g04162 3 72988479 72990671 Vivi1g05553 1 121977062 121981370 PCT