Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05550 ATGTTGAAATTCACAAAAGGTTCGTATTCTCGGAGTGGTGGATCAGTGGGTGTAGAGAATGGATCAAGAGGAGATACTATTTCTTTTGATCATGCAAGAAATTCTTCAGCTCAGTATGATTTCTCGAGAAACAATGATCTGTTGAATCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCCGAGAAAGACCTGGGCAATGAGTTTTTTAAACAGAAGAAATTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCACATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACGGAGGCCTTAAATCTTGACGATCGCTACATAAAAGCATACTCGCGGCGAGCAACAGCTAGAAAAGAACTTGGGAAAAATAAAGAATCAATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAATCACTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAAAAACACTATGCAAAAAATGGGAAAGTCTGAGGCAAAAGTTAATGGAAGCAGCAGTATCCACTCTGTTTCACATGGTACTCAAAAGTCAGGTCCAACTGAAGCTCATCATCAAACCAAGGGTAGTGAGGGGAAAATTCCTGCTAAAGAATCACTCTTAATGGAGGAGATCAATACCAAGGCTACCAAATCTGGAAGCAAGACTCAGGGACAAGTAGGCAATGGTTCTAAGGAAGGTCATGGTGCAACCAACAGCTTGGAGCAGAGAAATCACAAAACTAGAAAGCCGGAAATTAAAGCATCTGTTGAGCAGCTTGCTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAAAAATATAACACCCCCAACCACAGCTTATCAGTTTGAAGTCTCTTGGAGAGGGTTTTTAGGTGATCGTGCTTTGCAGGCTTGTCTATTAAAGGCATTGTCTCCCCAAGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTTGTTGAGATCATCAAGTGTGCTGCATCTTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGAACAATTTAACCAAGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGATAAGGATGACTTGCGCAAGATCTGGAATGAAGTGTTCTGTGGTGAAGCAACTCCGGCGGAGTATGCAGAGATTCTGGATAGCCTCCGATCAAAGTTCTACCTTGACTAG 1308 0.4174 MLKFTKGSYSRSGGSVGVENGSRGDTISFDHARNSSAQYDFSRNNDLLNRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAHANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEILHKTSKALKNTMQKMGKSEAKVNGSSSIHSVSHGTQKSGPTEAHHQTKGSEGKIPAKESLLMEEINTKATKSGSKTQGQVGNGSKEGHGATNSLEQRNHKTRKPEIKASVEQLASRAASLAMAEAAKNITPPTTAYQFEVSWRGFLGDRALQACLLKALSPQELPKIFKNALSSTLLVEIIKCAASFFAEDMDLVVSYMNNLTKVPRFDVIVMCLPSADKDDLRKIWNEVFCGEATPAEYAEILDSLRSKFYLD 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05550 435 MobiDBLite consensus disorder prediction 246 272 - -
Vivi1g05550 435 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Vivi1g05550 435 MobiDBLite consensus disorder prediction 192 286 - -
Vivi1g05550 435 Pfam Tetratricopeptide repeat 98 126 IPR019734 GO:0005515
Vivi1g05550 435 Pfam Potential Monad-binding region of RPAP3 312 401 IPR025986 -
Vivi1g05550 435 MobiDBLite consensus disorder prediction 192 224 - -
Vivi1g05550 435 PANTHER OS05G0129900 PROTEIN 24 434 - -
Vivi1g05550 435 SMART tpr_5 130 163 IPR019734 GO:0005515
Vivi1g05550 435 SMART tpr_5 97 129 IPR019734 GO:0005515
Vivi1g05550 435 SMART tpr_5 63 96 IPR019734 GO:0005515
Vivi1g05550 435 MobiDBLite consensus disorder prediction 8 24 - -
Vivi1g05550 435 Gene3D Tetratricopeptide repeat domain 51 161 IPR011990 GO:0005515
Vivi1g05550 435 SUPERFAMILY TPR-like 59 175 IPR011990 GO:0005515
Vivi1g05550 435 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05550 Vivi-Chr1 121888244 121893538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05550 67 133 U-box Gene Family AT3G07370 39.706 2.25e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05550 K23002 - gmx:100784528 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05550 1 121888244 121893538 Vivi1g05550 1 121888244 121893538 ECH