Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05549 ATGGATTTCCAGGGTTTCTTAAACGACTTGCAGGATTGGGAATTTTCCACAAAGGATAATAAAGCGGCAAAAGTCAAATCACAAAAGGAAAATAAATTCACAAAAGGTTCGTATTCTCGGAGTGGTGGATCAGTGGGTGTAGAGAATGGATCAAGAGGAGATACTATTTCTTTTGATCATGCAAGAAATTCTTCAGCTCAGTATGATTTCTCGAGAAACAATGATCTGTTGAATCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCCGAGAAAGACCTGGGCAATGAGTTTTTTAAACAGAAGAAATTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCACATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACGGAGGCCTTAAATCTTGACGATCGCTACATAAAAGCATACTCGCGGCGAGCAACAGCTAGAAAAGAACTTGGGAAAAATAAAGAATCAATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAATCACTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAAAAACACTATGCAAAAAATGGGAAAGTCTGAGGCAAAAGTTAATGGAAGCAGCAGTATCCACTCTGTTTCACATGGTACTCAAAAGTCAGGTCCAACTGAAGCTCATCATCAAACCAAGGGTAGTGAGGGGAAAATTCCTGCTAAAGAATCACTCTTAATGGAGGAGATCAATACCAAGGCTACCAAATCTGGAAGCAAGACTCAGGGACAAGTAGGCAATGGTTCTAAGGAAGGTCATGGTGCAACCAACAGCTTGGAGCAGAGAAATCACAAAACTAGAAAGCCGGAAATTAAAGCATCTGTTGAGCAGCTTGCTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAAAAATATAACACCCCCAACCACAGCTTATCAGTTTGAAGTCTCTTGGAGAGGGTTTTTAGGTGATCGTGCTTTGCAGGCTTGTCTATTAAAGGCATTGTCTCCCCAAGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTTGTTGAGATCATCAAGTGTGCTGCATCTTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGAACAATTTAACCAAGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGATAAGGATGACTTGCGCAAGATCTGGAATGAAGTGTTCTGTGGTGAAGCAACTCCGGCGGAGTATGCAGAGATTCTGGATAGCCTCCGATCAAAGTTCTACCTTGACTAG 1395 0.4143 MDFQGFLNDLQDWEFSTKDNKAAKVKSQKENKFTKGSYSRSGGSVGVENGSRGDTISFDHARNSSAQYDFSRNNDLLNRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAHANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEILHKTSKALKNTMQKMGKSEAKVNGSSSIHSVSHGTQKSGPTEAHHQTKGSEGKIPAKESLLMEEINTKATKSGSKTQGQVGNGSKEGHGATNSLEQRNHKTRKPEIKASVEQLASRAASLAMAEAAKNITPPTTAYQFEVSWRGFLGDRALQACLLKALSPQELPKIFKNALSSTLLVEIIKCAASFFAEDMDLVVSYMNNLTKVPRFDVIVMCLPSADKDDLRKIWNEVFCGEATPAEYAEILDSLRSKFYLD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05549 464 MobiDBLite consensus disorder prediction 24 58 - -
Vivi1g05549 464 SUPERFAMILY TPR-like 88 204 IPR011990 GO:0005515
Vivi1g05549 464 MobiDBLite consensus disorder prediction 34 58 - -
Vivi1g05549 464 SMART tpr_5 126 158 IPR019734 GO:0005515
Vivi1g05549 464 SMART tpr_5 159 192 IPR019734 GO:0005515
Vivi1g05549 464 SMART tpr_5 92 125 IPR019734 GO:0005515
Vivi1g05549 464 Pfam Tetratricopeptide repeat 127 155 IPR019734 GO:0005515
Vivi1g05549 464 MobiDBLite consensus disorder prediction 275 301 - -
Vivi1g05549 464 Gene3D Tetratricopeptide repeat domain 80 190 IPR011990 GO:0005515
Vivi1g05549 464 MobiDBLite consensus disorder prediction 221 253 - -
Vivi1g05549 464 Pfam Potential Monad-binding region of RPAP3 341 430 IPR025986 -
Vivi1g05549 464 MobiDBLite consensus disorder prediction 221 315 - -
Vivi1g05549 464 ProSiteProfiles TPR repeat profile. 92 125 IPR019734 GO:0005515
Vivi1g05549 464 PANTHER OS05G0129900 PROTEIN 1 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05549 Vivi-Chr1 121888147 121893538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05549 96 162 U-box Gene Family AT3G07370 39.706 2.93e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05549 K23002 - gmx:100784528 637.106