Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05544 ATGGAAGGCAAGAAAGAGACGGTGAAGAAGACGGTTCCATCACAACTCTCCAATGTTGATGTCAAACACTACTCTTCGCCTGATGAGACCTTCTACGTCAAACTCACTGACTTGTTGGACTCTTCTGGATACAATCTCATTTTGAATGTCCGAGAAACATCCTTGGACTTGTACCTCTTTTACTTGGAGGTTACCAAAAGAGGAGGTTATCACCAGGTTGGTAAAGAAAAGAAATGGGGTGAAATTGTGTCTGCTCTTAAACTGGAAGGAAACAATGCAAAGTTATGTCTTCAACTTGAAAAGCTTTATGCAAAGCTTCTATACAAATTTGAGAAACTTTACTTCTACACGTTCCCTGATTCTCAAACTCCAACTGTCACCACCAAAGCTAAAAGGAAGCAGAGCTCAGCCACTTTTTTATCCCAATTAATGGATGATAGAGATTATCAGACAACAGCAAAGATATCCAAGGACTACCCTATCAAAATGACAGCAATACCTGAAGTGCTCCTACAAACACCACCAAAGGACAAAGAAAAGAAGAAAAAACAAGGTACTCCAATAGGAAGAAGTGGATATCAAATTTTCCTCATGCGGGAATGTGCGCGATTAAAAGCTTCTCGTCTGGATATAGATGGAAAAACAGTCATGCGCATGGCTGTCTATGGATGGAATAACTTGTCAGACATTGAAAAACAGCCATATTTGGAAGAAAGCAAGAAGATAAAGGAACAAAAGAAGGTAGCAATGATCACTGGAAATAATAAACAGAAGAGCACTCAAGATCTTAAGAAGGACGAAAAGAAGCCTAATGAGTGTTGCGGTGACTACTACTCTGTAACTTTGCAGCCTCGAGCAAATAACCCTCTTATGAACAATGCAGCAGTGGACTTGGCTTCTAAAATCACAGAAAAAACATCCAAAGATCCCTTCATATTTGATTTGGATGCTCATCGTTCCATAGATTTGGTAACCGGGATAGCAGCAGGAGAACCCAAATAA 1002 0.3992 MEGKKETVKKTVPSQLSNVDVKHYSSPDETFYVKLTDLLDSSGYNLILNVRETSLDLYLFYLEVTKRGGYHQVGKEKKWGEIVSALKLEGNNAKLCLQLEKLYAKLLYKFEKLYFYTFPDSQTPTVTTKAKRKQSSATFLSQLMDDRDYQTTAKISKDYPIKMTAIPEVLLQTPPKDKEKKKKQGTPIGRSGYQIFLMRECARLKASRLDIDGKTVMRMAVYGWNNLSDIEKQPYLEESKKIKEQKKVAMITGNNKQKSTQDLKKDEKKPNECCGDYYSVTLQPRANNPLMNNAAVDLASKITEKTSKDPFIFDLDAHRSIDLVTGIAAGEPK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05544 333 CDD HMG-box_SF 190 245 - -
Vivi1g05544 333 Pfam HMG-box domain 190 250 IPR009071 -
Vivi1g05544 333 SMART hmgende2 185 255 IPR009071 -
Vivi1g05544 333 Gene3D - 4 144 IPR036431 GO:0003677
Vivi1g05544 333 Pfam ARID/BRIGHT DNA binding domain 29 111 IPR001606 GO:0003677
Vivi1g05544 333 SUPERFAMILY HMG-box 175 247 IPR036910 -
Vivi1g05544 333 ProSiteProfiles ARID domain profile. 25 115 IPR001606 GO:0003677
Vivi1g05544 333 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 172 267 - -
Vivi1g05544 333 SMART ARID_2 22 111 - -
Vivi1g05544 333 Gene3D High mobility group box domain 172 254 IPR036910 -
Vivi1g05544 333 SMART bright_3 26 116 IPR001606 GO:0003677
Vivi1g05544 333 SUPERFAMILY ARID-like 26 116 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05544 Vivi-Chr1 121815436 121817376 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05544 31 251 ARID Transcription Factor Family AT3G13350 24.806 1.49e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi1g05544 ARID 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05544 - - mtr:120577736 344.739