Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05542 ATGGAAGAAGACAAGGAAGAGGTGAAGACGATGGTCTCATCACAACCAGAAACAGATATCCAACTCACCAATGTTGATGTGAAACAGTACTCTTCTCCAAATGACTTAGAGACCTTCTACGTCAAACTCACTGACTTGTTGGACTCTTCTGGATACAATCTCATTTTGAATGTCCGAAAAACTTGCTTAGACTTGTACCTGTTTTACATGGAAGTCACCAAAAGAGGAGGTTATCACCAGGTTCGTAAGGAAAAGAAATGGGGTGAAATTGTTTCAGCACTGAAACTGGAAGGAAACAATGCAAGGCTATGTACTCAAGTTCAAAAGCTCTATGGAAAGCTTCTATACAAATTTGAGAAACTTTACTTCTACAGGTTTCCTGCGTCTCAAACTGCATCTGGCAGCACCAAAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTATCCCAATTAGTGGATGATGGAGATTATCCGACAGCGGCAGAGATATCCAAGGACTGCCCTATCAATGTGACAGCAATACCTGAAGTGCAACTACAGACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCAACGGGACGAAGTGGATATCAAATTTTCCTCAAGCAGGAATGTGCGCGATTAAAAGCTTCTGGTCAGGACATAGATGGCAAGCATATCCTGCGCGTGGCGGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAAAAGAAGGAAGCAATGATGACTGAAAATAATAAACAGAAGAGCACTCTAGATCTTAACAAGGATGAAAAGAAGGCTAATCTGTGTTGTGGTGACTACTACTGTGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGCAGTGGATTTGGCTTATAAAATGACAGAAAAAACATCCAAAGATCCCTTCTTCCCATTTGATCTGGATGCTTATCGTTCCGTAGATTTGCTAACCGGGTTAGCAATCGGAGAACCCAAATAA 1029 0.413 MEEDKEEVKTMVSSQPETDIQLTNVDVKQYSSPNDLETFYVKLTDLLDSSGYNLILNVRKTCLDLYLFYMEVTKRGGYHQVRKEKKWGEIVSALKLEGNNARLCTQVQKLYGKLLYKFEKLYFYRFPASQTASGSTKAKRKQGSTSSLSQLVDDGDYPTAAEISKDCPINVTAIPEVQLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDGKHILRVAVEEWNKLSDIDKQPYVEESKKMKEQKKEAMMTENNKQKSTLDLNKDEKKANLCCGDYYCVTLQPQANNPLVNNAAVDLAYKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05542 342 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 194 262 IPR009071 -
Vivi1g05542 342 SMART hmgende2 195 263 IPR009071 -
Vivi1g05542 342 Pfam ARID/BRIGHT DNA binding domain 37 119 IPR001606 GO:0003677
Vivi1g05542 342 ProSiteProfiles ARID domain profile. 33 123 IPR001606 GO:0003677
Vivi1g05542 342 SUPERFAMILY ARID-like 29 123 IPR036431 GO:0003677
Vivi1g05542 342 SUPERFAMILY HMG-box 181 258 IPR036910 -
Vivi1g05542 342 Coils Coil 243 263 - -
Vivi1g05542 342 Gene3D High mobility group box domain 179 276 IPR036910 -
Vivi1g05542 342 SMART ARID_2 30 119 - -
Vivi1g05542 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 181 277 - -
Vivi1g05542 342 SMART bright_3 34 124 IPR001606 GO:0003677
Vivi1g05542 342 Pfam HMG-box domain 198 260 IPR009071 -
Vivi1g05542 342 CDD HMG-box_SF 198 253 - -
Vivi1g05542 342 Gene3D - 14 144 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05542 Vivi-Chr1 121803383 121805308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05542 39 267 ARID Transcription Factor Family AT3G13350 23.333 1.35e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi1g05542 ARID 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05542 - - mtr:120577736 355.14