Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05541 ATGGAAGGCAAGGAAGAGGCGGTGAAGACGTTGGTTCCATCACAACTCACCAATGTTGATGTTAAACAGTACTCTTCTCCGGATGACTTAGAGACTTTCTACGTCAAACTCACCGACTTGTTGGACTCCTCTGGTTTCACTCTCATTTTGAATGTCCGAGAAACATCCTTGGACTTGTACCTCTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTGGTAAAGAAAAGAAATGGGGTGAAATTGTGTCTGCTCTAAAACTGGAAGGAAACAATGCAAAATTATGTGCTCAACTTGAAAAGCTCTATGCAAATCTTCTTTACAAATTTGAGAAATTTTACTTCTATAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGGTTCGGCTAAAAGGAAGCATAGCTCAACCTCAAGTTTATCCCAATTAATGGATGATGGGGATTATCAGACAGCGGCAAAGATATCCAACGACTACCCTATCAAAATGACAGCAATTCCTGAAGTGCAACTACAAACACCAACCAAGGACAAAGTAAAGAAGAAAAAGCGAGGTGTTCCAACGGGACGAAGTGGATATCAAATTTTCCTCATGCAAGAATGTGCCCGATTAAAAGCTTCTCGTCAGGATTTAGATGGAAAAACAGTCGTGCGCATGGCTGTCGATGGATGGAATAACTTGTCGGACATTGATAAACAGCCATATTTGGAAGAAAGCAAGAAGATAAGGGAGCAAATGAAGGAAGCAATGATGACTGAAAATAATAAAAAGAAGAGCACCCAAGATCTTAACAAGGATGAAAAGAAGCCTAATCTGTGTTGTGGTGATCACTACAGTGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGCAGTGGACATGGCTTCTAAAATGACAGAAAAAACATCCAAGGATCCCTTCTTCCCATTTGATTTGGAAGCTTATCGTTCCGTAGATTTGCTAACTGGGATAGCTACTGGAGAACCCAAGTAA 1017 0.411 MEGKEEAVKTLVPSQLTNVDVKQYSSPDDLETFYVKLTDLLDSSGFTLILNVRETSLDLYLFYLEVTKRGGYHQVGKEKKWGEIVSALKLEGNNAKLCAQLEKLYANLLYKFEKFYFYRFPASQTATGSTKGSAKRKHSSTSSLSQLMDDGDYQTAAKISNDYPIKMTAIPEVQLQTPTKDKVKKKKRGVPTGRSGYQIFLMQECARLKASRQDLDGKTVVRMAVDGWNNLSDIDKQPYLEESKKIREQMKEAMMTENNKKKSTQDLNKDEKKPNLCCGDHYSVTLQPQANNPLVNNAAVDMASKMTEKTSKDPFFPFDLEAYRSVDLLTGIATGEPK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05541 338 ProSiteProfiles ARID domain profile. 27 117 IPR001606 GO:0003677
Vivi1g05541 338 SUPERFAMILY HMG-box 176 254 IPR036910 -
Vivi1g05541 338 SMART bright_3 28 118 IPR001606 GO:0003677
Vivi1g05541 338 Pfam HMG-box domain 194 257 IPR009071 -
Vivi1g05541 338 Gene3D High mobility group box domain 174 258 IPR036910 -
Vivi1g05541 338 SMART ARID_2 24 113 - -
Vivi1g05541 338 Pfam ARID/BRIGHT DNA binding domain 31 113 IPR001606 GO:0003677
Vivi1g05541 338 SUPERFAMILY ARID-like 24 118 IPR036431 GO:0003677
Vivi1g05541 338 MobiDBLite consensus disorder prediction 125 147 - -
Vivi1g05541 338 CDD HMG-box_SF 194 249 - -
Vivi1g05541 338 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 190 258 IPR009071 -
Vivi1g05541 338 Coils Coil 240 260 - -
Vivi1g05541 338 Gene3D - 14 137 IPR036431 GO:0003677
Vivi1g05541 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 179 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05541 Vivi-Chr1 121785767 121787921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05541 33 255 ARID Transcription Factor Family AT3G13350 24.806 4.97e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi1g05541 ARID 4.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05541 - - mtr:120577736 353.214