Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05540 ATGGATTCATTCCAAGAACCATCACACACCTCGCAAGAATCCAATCACAAAAAACGCCGCAAAATCGGTGACACCACCGCCGATCAAAGCTCCCTCACTCTCATGCGGTGGAGATCTGAATCGGACCAAAACAACTACTCCAAAAAACTAATCGAAGCTCTCAGCCGGATCAACTCTCCGTCAACCACCAAACCTACACCCGCCGGTCAAGTCCGCGAAACCGCCGATCGCGTCCTCGCCACGTCCGCCAAAGGAAGAACACGCTGGAGCCGCGCGATTCTCGGAAAATGGAAGAAACTCCGCAGACATCACCGTAAAGTCAAGAAAGCTGCAACTGGATTGAACAGAACCGGAATCGTAAACCAGAGGATGACGAGACGGTTACCGGCTGTGCAGAAGAAAACGCGCGTGCTCGGCCGGTTGGTTCCCGGTTGCCGGAAAGTACCTTTACCGAACCTTCTAGAAGAAGCTACTGATTATATTTCTGCCTTGGAGATGCAAGTGCGTGCTATGACTGCTCTCGCTGAGCTTCTCGCCGGTCGAACATCGGCGGGACTCGCCGGTCAAGTGCTGAGTTGA 579 0.532 MDSFQEPSHTSQESNHKKRRKIGDTTADQSSLTLMRWRSESDQNNYSKKLIEALSRINSPSTTKPTPAGQVRETADRVLATSAKGRTRWSRAILGKWKKLRRHHRKVKKAATGLNRTGIVNQRMTRRLPAVQKKTRVLGRLVPGCRKVPLPNLLEEATDYISALEMQVRAMTALAELLAGRTSAGLAGQVLS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05540 192 MobiDBLite consensus disorder prediction 11 25 - -
Vivi1g05540 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Vivi1g05540 192 MobiDBLite consensus disorder prediction 1 36 - -
Vivi1g05540 192 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 39 178 IPR044660 GO:0006355
Vivi1g05540 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 181 IPR036638 GO:0046983
Vivi1g05540 192 CDD bHLH_AtIBH1_like 123 175 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05540 Vivi-Chr1 121763113 121764110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05540 1 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 42.021 4.17e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05540 - - gmx:100783462 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05540 1 121763113 121764110 Vivi1g05540 1 121763113 121764110 ECH