Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05536 ATGTCCGACCCCAAAAACACTGACCAATACGGCGTCCTCCTCTACTACAAATACGTCGATATTCCAAACCTCAATGACCTCCTCACATTCTACCGCTCCAACTGCTCCTCCCTTTCCCTCCTCGGCCGCGTTCGCCTCTCTCCCCACGGCGTCAATGTCACCGTTGGCGGCAATTTATCCGCTTTGGAACAACACATCGAAGCACTCAAAGCCAATAGTACTCTATTTCACGGCACTGATTTCAAGCTTGCAACTTGTCATCAACCATTGAACGACGACGTTGCCAAGGAGTGTGGTTTCACTTCACTCTCGATTCGTATTGTTAAGGAATTGGTTACTCTTAGTTCTCATCCACTGTTAAATTCGCCAGAAATCTCAAATGCTGGAACACATTTATCAGCACTTGAGTTTCATTCTACACTTCATAATGCTAATAAAGAGAGTCCAGAAAACGGCCTTGTTTTACTTGATGCAAGGAATCTTTATGAAACAAGGATTGGGAAATTTCATGCACCAAATGTTGAAACTTTGGATCCACAGGTTAGACAGTACAGTGATTTCTCCTCGTGGATAGATGATAGAAGTGAGCAGTTGAAAGGCAAAAATATCCTCATGTATTGTACTGGTGGAATCAGGTGTGAAATGGCATCAGCATATATTAGGTCAAAAGGTGCTGGGTTTGAGAACGTGTTTCAGCTATTTGGTGGTATTCAACGGTATTTGGAGCAATTCCCAGATGGTGGTTATTTCAAAGGAAAGAATTTTGTTTTTGATCATCGGATATCAGTTGGAGGTTCAGAGGCTAGTAGTACAATTGGTACCTGTCTTATTTGTCAATGTTCCTTTGACGATTATTCTTCACGTTGTCGATGTGCTTATTGCAGAATGCTTGTCTTGGTTTGTGAGAATTGCCAGAGCGAATCTGCACTGTATGTTTGTGAGCTATGCCAAAAACAGGGCAAGGCTGTTGGGTCAAAGCAGTTAAATGAAAACGATGATTCAAAAAAATCATTACAAGGTGTCGAGTTCCAAGAATTTTCTTCAGATACTATGCTCTTGCCTCAGGAGCTTAGGGGAGACGGTAAGATGTAA 1092 0.4231 MSDPKNTDQYGVLLYYKYVDIPNLNDLLTFYRSNCSSLSLLGRVRLSPHGVNVTVGGNLSALEQHIEALKANSTLFHGTDFKLATCHQPLNDDVAKECGFTSLSIRIVKELVTLSSHPLLNSPEISNAGTHLSALEFHSTLHNANKESPENGLVLLDARNLYETRIGKFHAPNVETLDPQVRQYSDFSSWIDDRSEQLKGKNILMYCTGGIRCEMASAYIRSKGAGFENVFQLFGGIQRYLEQFPDGGYFKGKNFVFDHRISVGGSEASSTIGTCLICQCSFDDYSSRCRCAYCRMLVLVCENCQSESALYVCELCQKQGKAVGSKQLNENDDSKKSLQGVEFQEFSSDTMLLPQELRGDGKM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05536 363 Pfam Rhodanase C-terminal 251 317 IPR022111 -
Vivi1g05536 363 Pfam UPF0176 acylphosphatase like domain 11 110 IPR040503 -
Vivi1g05536 363 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 116 263 IPR036873 -
Vivi1g05536 363 Gene3D - 2 112 - -
Vivi1g05536 363 ProSiteProfiles Rhodanese domain profile. 149 249 IPR001763 -
Vivi1g05536 363 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 5 332 IPR020936 -
Vivi1g05536 363 SMART rhod_4 139 246 IPR001763 -
Vivi1g05536 363 FunFam Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 119 278 - -
Vivi1g05536 363 SUPERFAMILY FYVE/PHD zinc finger 268 319 IPR011011 -
Vivi1g05536 363 Gene3D - 121 277 IPR036873 -
Vivi1g05536 363 FunFam Rhodanese-like domain-containing protein 6 2 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05536 Vivi-Chr1 121514330 121518102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05536 5 322 Sulfurtransferasese or Rhodanese AT1G09280 70.755 5.81e-168 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05536 - - mtr:25484701 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05536 1 121514330 121518102 Vivi1g05536 1 121514330 121518102 ECH