Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05535 ATGTCCGACCCCAAAAACACTGACCAATACGGCGTCCTCCTCTACTACAAATACGTCGATATTCCAAACCTCAATGACCTCCTCACATTCTACCGCTCCAACTGCTCCTCCCTTTCCCTCCTCGGCCGCGTTCGCCTCTCTCCCCACGGCGTCAATGTCACCGTTGGCGGCAATTTATCCGCTTTGGAACAACACATCGAAGCACTCAAAGCCAATAGTACTCTATTTCACGGCACTGATTTCAAGCTTGCAACTTGTCATCAACCATTGAACGACGACGTTGCCAAGGAGTGTGGTTTCACTTCACTCTCGATTCGTATTGTTAAGGAATTGGTTACTCTTAGTTCTCATCCACTGTTAAATTCGCCAGAAATCTCAAATGCTGGAACACATTTATCAGCACTTGAGTTTCATTCTACACTTCATAATGCTAATAAAGAGAGTCCAGAAAACGGCCTTGTTTTACTTGATGCAAGGAATCTTTATGAAACAAGGATTGGGAAATTTCATGCACCAAATGTTGAAACTTTGGATCCACAGGTTAGACAGTACAGTGATTTCTCCTCGTGGATAGATGATAGAAGTGAGCAGTTGAAAGGCAAAAATATCCTCATGTATTGTACTGGTGGAATCAGGTGTGAAATGGCATCAGCATATATTAGGTCAAAAGGTGCTGGGTTTGAGAACGTGTTTCAGCTATTTGGTGGTATTCAACGGTATTTGGAGCAATTCCCAGATGGTGGTTATTTCAAAGGAAAGAATTTTGTTTTTGATCATCGGATATCAGTTGGAGGTTCAGAGGCTAGTAGTACAATTGGTACCTGTCTTATTTGTCAATGTTCCTTTGACGATTATTCTTCACGTTGTCGATGTGCTTATTGCAGAATGCTTGTCTTGGTTTGTGAGAATTGCCAGAGCGAATCTGCACTGTATGTTTGTGAGCTATGCCAAAAACAGGGCAAGGCTGTTGGGTCAAAGCAGTTAAATGAAAACGATGATTCAAAAAAATCATTACAAGGTGTCGAGTTCCAAGAATTTTCTTCAGATACTATGCTCTTGCCTCAGGAGCTTAGGGGAGACGATGTAAGAACCTCGAGAAAACTAAGAATCTTATGCTTGCATGGGTTTCGGCAGAATGCTTCCAGTTTTAAGGGAAGAACAGCATCCTTAGCCAAAAAACTCAAGAAAATTGCCGAATTTGTTTTTATAGACGCACCTCATGAAGTGCCCTTCATTTATCAATCACCTGTTCCAGTGCACCATGCGAATGGTGCATCGTCCTCTTTGCCAGCAAGTCCTCCCCCACCTTTCGAGAATTGTAAGAAGAAGTTTGCATGGTTTGTGGCACCCAATTTTGATGGAAGTAGCGGTGTTGATTGGAAAGTAGCAGATGGTCCATTTGATCCACGTCAATACCAGCAGCAAACTGATGGATATGATATTTCAATATCACACTTAGAGGATGTATTCTCCAAAGAAGGGCCGTTTGATGGAATCTTGGGATTTTCACAGGGAGCAGCAATGACTGCTGTAATCTCTGCACAACAAGAAAAGCTAAAAGGTAAAATGGACTTTAAATTTGTAGTCTTGTGTTCAGGCTTTGCTCTCAATTTGAAGGAGATAGAGTGCACCCCTATCAGGTGTCCTTCTCTTCATATTTTTGGTAATGAACACGGTCAAGACAGACAGATAGCTAACCAAGCAAGCAAGGAACTTGCTTCTCTATACGACGGTAGTTGTTCTGTGATCGTTGAACATGACTGTGGTCACATAATTCCAACTCGGTCCCCATATATTGATGAGATCAAGGCTTTCCTTGGGAGATTTATGCAATATGACTAG 1842 0.4224 MSDPKNTDQYGVLLYYKYVDIPNLNDLLTFYRSNCSSLSLLGRVRLSPHGVNVTVGGNLSALEQHIEALKANSTLFHGTDFKLATCHQPLNDDVAKECGFTSLSIRIVKELVTLSSHPLLNSPEISNAGTHLSALEFHSTLHNANKESPENGLVLLDARNLYETRIGKFHAPNVETLDPQVRQYSDFSSWIDDRSEQLKGKNILMYCTGGIRCEMASAYIRSKGAGFENVFQLFGGIQRYLEQFPDGGYFKGKNFVFDHRISVGGSEASSTIGTCLICQCSFDDYSSRCRCAYCRMLVLVCENCQSESALYVCELCQKQGKAVGSKQLNENDDSKKSLQGVEFQEFSSDTMLLPQELRGDDVRTSRKLRILCLHGFRQNASSFKGRTASLAKKLKKIAEFVFIDAPHEVPFIYQSPVPVHHANGASSSLPASPPPPFENCKKKFAWFVAPNFDGSSGVDWKVADGPFDPRQYQQQTDGYDISISHLEDVFSKEGPFDGILGFSQGAAMTAVISAQQEKLKGKMDFKFVVLCSGFALNLKEIECTPIRCPSLHIFGNEHGQDRQIANQASKELASLYDGSCSVIVEHDCGHIIPTRSPYIDEIKAFLGRFMQYD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05535 613 Pfam Serine hydrolase (FSH1) 366 601 IPR005645 -
Vivi1g05535 613 Gene3D alpha/beta hydrolase 364 612 IPR029058 -
Vivi1g05535 613 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 5 609 IPR020936 -
Vivi1g05535 613 FunFam esterase OVCA2 isoform X6 364 611 - -
Vivi1g05535 613 Gene3D - 121 277 IPR036873 -
Vivi1g05535 613 Pfam UPF0176 acylphosphatase like domain 11 110 IPR040503 -
Vivi1g05535 613 Pfam Rhodanase C-terminal 251 317 IPR022111 -
Vivi1g05535 613 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 117 263 IPR036873 -
Vivi1g05535 613 SUPERFAMILY alpha/beta-Hydrolases 365 611 IPR029058 -
Vivi1g05535 613 FunFam Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 119 278 - -
Vivi1g05535 613 FunFam Rhodanese-like domain-containing protein 6 2 112 - -
Vivi1g05535 613 Gene3D - 2 112 - -
Vivi1g05535 613 ProSiteProfiles Rhodanese domain profile. 149 249 IPR001763 -
Vivi1g05535 613 SMART rhod_4 139 246 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05535 Vivi-Chr1 121513532 121518102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05535 5 610 Sulfurtransferasese or Rhodanese AT1G09280 62.295 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05535 - - mtr:25484701 1143.26