Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05527 ATGGCATCCAAATCCACAGCCAGTTCTTCCTCTGCCGCACCAACCATCTTCCAGCCCGGAACCTTAGTTGAAATCAGCATCAACGAAGCTGGATTCCGAGGTTCATGGTTCACCGGAAAGATTGTCCGTCGTCTCGGAGGTCACAATTTTGTTGTGGAGTTTGACAAAATAATGGTGGATGAGAAGGGAACAAAGGGCCTCCAAGAAACTGTTGACCGTTCCCAGCTCCGTCCAATTCCTCCAAAGGAGATCATCCAGGACTTCCAACCTGGTGCTGGAGTTGACGCTTATTACAACGACGGATGGTGGGAGGGTATCTACGCTGGATCATTAGAGGACGGTAGGAGTATGGTGTGTTTCAGAGATTCGTCACAAGCGTACCCCGACAACGAACTCAGGCTCCACCATGATTGGGTCGACGGAAGCTGGATCCCACCATTTCCACAACAGGATGAAAGTGAAATCAAGAAAAAGGTGAGGGTGAAGGCTTTTGAAACTGTGACTGAAGACAATGTTGATTTCAGGTTCAAACCAGGGACATTGGTTGAGGTGTGCAGTGATGAAGATGGTTTAAAAGGGGTTTGGTTTTGTGCAACCCTAGTTGAGCCAAAGCCGGGTTGTAAATTTGTTGTTGAATATGAAAGTCTTATAGAGGATGATTATTTAAAGCCTTTGAGAGAGGAAGTCAGTCTATATCAGATTAGGCCTCGTCCCCCAAAAACTGATGATGTTGATCAGTTTAAGTTTTTTGATGAAGTTGATGCATATTATAAGGACGGTTGGTGGGTTGGGATTGTTTCTAAAGTTCTCGGAGACTCGAAATATATTGTTTATTTTCGAAACTCCAATGAAGAAATGGAGTTTCAACATTCCCAGTTGAGGCTGCATCAGGATTGGGTGGATCATCAATGGGTAATGGCTTCTAAGTGTGTTGGATTGCATATTGTCACTATTGCTTTTATGATCTAG 969 0.4448 MASKSTASSSSAAPTIFQPGTLVEISINEAGFRGSWFTGKIVRRLGGHNFVVEFDKIMVDEKGTKGLQETVDRSQLRPIPPKEIIQDFQPGAGVDAYYNDGWWEGIYAGSLEDGRSMVCFRDSSQAYPDNELRLHHDWVDGSWIPPFPQQDESEIKKKVRVKAFETVTEDNVDFRFKPGTLVEVCSDEDGLKGVWFCATLVEPKPGCKFVVEYESLIEDDYLKPLREEVSLYQIRPRPPKTDDVDQFKFFDEVDAYYKDGWWVGIVSKVLGDSKYIVYFRNSNEEMEFQHSQLRLHQDWVDHQWVMASKCVGLHIVTIAFMI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05527 322 CDD Tudor_Agenet_AtDUF_rpt1_3 176 239 - -
Vivi1g05527 322 Pfam Agenet domain 179 239 IPR008395 -
Vivi1g05527 322 Pfam Agenet domain 20 81 IPR008395 -
Vivi1g05527 322 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 175 309 - -
Vivi1g05527 322 SMART agenet_At_2 15 84 IPR014002 -
Vivi1g05527 322 SMART agenet_At_2 245 301 IPR014002 -
Vivi1g05527 322 SMART agenet_At_2 174 242 IPR014002 -
Vivi1g05527 322 SMART agenet_At_2 86 140 IPR014002 -
Vivi1g05527 322 CDD Tudor_Agenet_AtDUF_rpt2_4 251 295 - -
Vivi1g05527 322 Gene3D - 159 247 - -
Vivi1g05527 322 CDD Tudor_Agenet_AtDUF_rpt1_3 17 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05527 Vivi-Chr1 121270417 121271672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05527 186 299 PHD Transcription Factor Family AT5G58610 26.866 3.02e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05527 - - vvo:131653004 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05527 1 121270417 121271672 Vivi1g05527 1 121270417 121271672 ECH