Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05526 ATGGCGTCCAACTCCAAAACACGCTCTTCCTCCCCCTCCGCAGCCGTCTTCAAACCTGGAACCTTAGTTGAAGTCAGCTCCGATGACGACGGATTTCGAGGTTCATGGTTTACCGGCCAGATCGTCCGTCGTCTCGTCGGTGACAAGTTCACGGTCGAGTATGATAACTTAATGGCGGATGAGGATGGCACAAAGCGCCTTAAAGAATCAATTAGGCTTCGCCAGCTCCGCCCAATTCCCCCTAAGGAGTTCACCCGGGAATTCAAATTCGGTGATGAAGTTGACGCCTATCACAACGATGGATGGTGGGAGGGTCACGTCACCGGAGTATTAGAGGATGGTAGAAAGACAGTGTACTTCAGAGTCTCGAGGGAGCAGCTGGAGTTTTCCGACGAGGAACTCAGGCTCCACCGTGAGTGGGTTGATGGAGGTTGGATCCCACCATTTCCACAACAGGATGATAGTGAAATCAAGAAAAAGGTTAGGGTGAAGGCTGCTGAAACTGTGACTGGAGACAATGCTGGTTTTAAGTTTAAGGAAGGGGAATTGGTTGAGGTATGCAGTGACGAAGATGGTTTCAAAGGGGCTTGGTTTAGTGCAACCGTTGTCGAGCCTAAGGGAGAAGGGAAGTTTGTTATTGAGTATGAGAGCCTGCTCGATGATGATTCAAAGCTTTTGAGAGAGGAGATCAGTCTCCTGCAAATTAGGCCTTGTCCACCAAAAACTGATGATGTTGATCAGTTTAAGTTTCTTGATGAAGTTGATGCATATTACAATGACGGTTGGTGGGTTGGGGTTGTTTCTAAAGTTCTTGGGGACTCCAAATATATTGTTTATTTCAGGAACTCCAATGAAGAACTGGAGTTTGAACATTCCCAGTTGAGGCTACATCAGGACTGGGTGGATAACAAATGGTTAATGGCTTCTAAGGCGTTAAAGTTTTGA 945 0.4709 MASNSKTRSSSPSAAVFKPGTLVEVSSDDDGFRGSWFTGQIVRRLVGDKFTVEYDNLMADEDGTKRLKESIRLRQLRPIPPKEFTREFKFGDEVDAYHNDGWWEGHVTGVLEDGRKTVYFRVSREQLEFSDEELRLHREWVDGGWIPPFPQQDDSEIKKKVRVKAAETVTGDNAGFKFKEGELVEVCSDEDGFKGAWFSATVVEPKGEGKFVIEYESLLDDDSKLLREEISLLQIRPCPPKTDDVDQFKFLDEVDAYYNDGWWVGVVSKVLGDSKYIVYFRNSNEELEFEHSQLRLHQDWVDNKWLMASKALKF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05526 314 Gene3D - 161 248 - -
Vivi1g05526 314 Gene3D - 8 90 - -
Vivi1g05526 314 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 177 310 - -
Vivi1g05526 314 CDD Tudor_Agenet_AtDUF_rpt1_3 178 240 - -
Vivi1g05526 314 Pfam Agenet domain 252 306 IPR008395 -
Vivi1g05526 314 Pfam Agenet domain 20 81 IPR008395 -
Vivi1g05526 314 Pfam Agenet domain 91 151 IPR008395 -
Vivi1g05526 314 Pfam Agenet domain 181 240 IPR008395 -
Vivi1g05526 314 CDD Tudor_Agenet_AtDUF_rpt2_4 251 296 - -
Vivi1g05526 314 SMART agenet_At_2 86 142 IPR014002 -
Vivi1g05526 314 SMART agenet_At_2 246 302 IPR014002 -
Vivi1g05526 314 SMART agenet_At_2 15 84 IPR014002 -
Vivi1g05526 314 SMART agenet_At_2 176 243 IPR014002 -
Vivi1g05526 314 CDD Tudor_Agenet_AtDUF_rpt2_4 91 136 - -
Vivi1g05526 314 CDD Tudor_Agenet_AtDUF_rpt1_3 17 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05526 Vivi-Chr1 121250452 121253619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05526 188 300 PHD Transcription Factor Family AT5G58610 30.597 1.46e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05526 - - vvo:131653004 453.751