Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05517 ATGGCGATAAAGAAGTATTTCTGCGAATATTGCGAAAAGCAATTTCAAGACACACCGTCAGATCGGAAACGCCACGCCGCCGGTACTCAACACAAACAAGCCAAAGCACGTTGGTACGATTCCTTCAAACCCCAACACCACAACCCTATTCCACAGCAACAACCTAATCAACCCTTCTGCTTTCACTTCGTCAACAAGGGATTTTGTCGTTACGGCGATTCTTGCAAGTATTTTCATCCCAATACACAGCAACAGCAACCAATCACAACCACGCCGTCGGGGAATGTAGGAGTGTCGTTCGGTAATTTACCGCCGTCGTTGCAACCTCCGCCTGAAGGTGGATACTCCTACACCCCCTTTGTCGACTGGGGGTAG 375 0.4907 MAIKKYFCEYCEKQFQDTPSDRKRHAAGTQHKQAKARWYDSFKPQHHNPIPQQQPNQPFCFHFVNKGFCRYGDSCKYFHPNTQQQQPITTTPSGNVGVSFGNLPPSLQPPPEGGYSYTPFVDWG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05517 124 SMART c3hfinal6 54 81 IPR000571 GO:0046872
Vivi1g05517 124 SUPERFAMILY CCCH zinc finger 57 83 IPR036855 GO:0046872
Vivi1g05517 124 Pfam U1 zinc finger 3 39 IPR013085 GO:0008270
Vivi1g05517 124 PANTHER NUCLEASE-RELATED 1 124 - -
Vivi1g05517 124 SUPERFAMILY beta-beta-alpha zinc fingers 4 52 IPR036236 -
Vivi1g05517 124 Gene3D Classic Zinc Finger 3 55 - -
Vivi1g05517 124 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Vivi1g05517 124 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05517 53 87 C3H Transcription Factor Family AT1G04990 48.571 5.44e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g05517 zf-U1 1.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05517 K13152 - gmx:100527203 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05517 1 121081404 121082195 Vivi1g05517 1 121081404 121082195 ECH