Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05488 ATGTATCGCGGTGGATGGAAAGAGGTTTCCTACAAGAAACGGTTCGCCCCGAAATGGGACACTTTTCCTTTTGGTGGTCGTAATCGTAACCCGTCTACCTCGCTAGGGGAAGTTACATCTTTGTTCGTGTCGGATTTTCCAGAAGGGTCAACAGCTAAGGATTTGTTTCAGCTCTTTGGGTGTTATGGTGCGGTGGTGGAGGTGGCAATTTCACCGAGGAGGAATTCTTTTGGGAAACGATTTGGCTTTGCTCGTTTTGTGGAGGTAATCGATGGTAGACTCTTAGCTGTGCGTCTGGACAATATAATTATTGGTGGTAAAAAAATACATGTCAATCTGCCAAGGTTCAAAAGGGATTCTTACAGGAGAGTAAAGGGTCATGGGGAGCCTGTGTTGGGCAAGATTGGGGTTCCACGAAATAGGTTTCACCCTGTCAGTAATGGAATTCCAAGGTCTGAGGCTGGGAAGGGTCACTCTTATGCTGAGGTCGTGGGAGGGAGACAACAGGATAACGTATCGAAAGTGTCGGAGAACATGTTGGTGCTTCAATCCTCGGAAGCCTTAAGAGGCCGGTTGGAGAGAGCATTTGTGGGCAAAGTCCATATTCCGGGTTCGGCTCATATCATCCAAACTCAATTCGAAATGGAAGGAGTTTTCGCTGTTAAAGTGTCCCCTATGGGTAGCAATTGGTGTCTGTTAGAAGAAAATGAGGAGGGCTTTATTGAAGATCTCATTGGTGAAGGAGAGGTGTGGTGGAAGACTTGGTTTTCGGAGATCAAAAAATGGGAACCTGGTGCTGTGGATCAACATAGAGATGTGTGGATTCGGATTTACGGGATCCCTCTCCATGCTTGGAGTTCTGACTGTTTTACGGCATTGGCTGAACAATGGGGGAGATTCATATGCATTGATGAATCCACGGCTAAAGGAGAGGCGTTTGACGTCGCGAGAATTATGATTAACGTGCCTATTGCTTGTCTGTTTCCTGATTTTGTCCATATTAATCTTGATGGACTGGTTTTCAAGCTTTTAATTAGAGAAGATGTTCAGGGCCTGTTTAGAACTTCTACTAAGGCACCGGCTGGTTCTTCGTGCAATAGCAGTTCCTCTGACTCGGTTGCGGAGTGTTGGAGCGATCATGATGGTAAGGTAGGGAGTATTTCGGACAGCATTGAACAATTTTCTGAGAAGAATTTGGAAGTGGAAAACGTTAAAGTGGATGGAGTGTTACGGTCCGATACTAATGCTGTGAGGGAATCTACCGCACATATTCCGGCTGTCAAGAAGGCTCCTCTGGTAGGCAATCATGCTGTTAGAGGAACTTATTTGGATGCTGGATCGACCGGGACAGTTCTGGAGCAGATTAAGGTGGCAGGCAGTGCGGATTTTACTGGGACAGCTTTGTCGCCAGTTTTAGTTGCCAGAGGGGAGGTGCAGGCTGAGGCGTCCCAGTCCAAGGTGGGTTGCACAATAGAATGTGGGGGATGTAATTCTGTTAGGAAAAAAATAAGGTACAGATTCATGGATGAAGTGGGCAAGAAGTCTTGTAGCGGCAAGGCTGGGAATAAAGAAATCGTTACAGTTTTCTGA 1590 0.4642 MYRGGWKEVSYKKRFAPKWDTFPFGGRNRNPSTSLGEVTSLFVSDFPEGSTAKDLFQLFGCYGAVVEVAISPRRNSFGKRFGFARFVEVIDGRLLAVRLDNIIIGGKKIHVNLPRFKRDSYRRVKGHGEPVLGKIGVPRNRFHPVSNGIPRSEAGKGHSYAEVVGGRQQDNVSKVSENMLVLQSSEALRGRLERAFVGKVHIPGSAHIIQTQFEMEGVFAVKVSPMGSNWCLLEENEEGFIEDLIGEGEVWWKTWFSEIKKWEPGAVDQHRDVWIRIYGIPLHAWSSDCFTALAEQWGRFICIDESTAKGEAFDVARIMINVPIACLFPDFVHINLDGLVFKLLIREDVQGLFRTSTKAPAGSSCNSSSSDSVAECWSDHDGKVGSISDSIEQFSEKNLEVENVKVDGVLRSDTNAVRESTAHIPAVKKAPLVGNHAVRGTYLDAGSTGTVLEQIKVAGSADFTGTALSPVLVARGEVQAEASQSKVGCTIECGGCNSVRKKIRYRFMDEVGKKSCSGKAGNKEIVTVF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05488 529 CDD RRM_SF 41 112 - -
Vivi1g05488 529 PANTHER DUF4283 DOMAIN PROTEIN 188 385 - -
Vivi1g05488 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Vivi1g05488 529 Gene3D - 25 123 IPR012677 -
Vivi1g05488 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 116 IPR000504 GO:0003723
Vivi1g05488 529 SUPERFAMILY RNA-binding domain, RBD 27 123 IPR035979 GO:0003676
Vivi1g05488 529 SMART rrm1_1 40 112 IPR000504 GO:0003723
Vivi1g05488 529 Pfam Domain of unknown function (DUF4283) 217 320 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05488 Vivi-Chr1 120460814 120462403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05488 39 127 Eukaryotic Initiation Factors Gene Family AT3G16380 26.966 9.68e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05488 - - vvo:131652899 1071.61