Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05485 ATGACTAGAAAGAAGGTGAAACTCGCATTCATCTCCGACGATTCGGCGCGAAAAGCAACGTACAAGAAAAGAAAGAAAGGCATCATCAAGAAGGTGAGTGAACTCACCATCCTCTGTGGAATTCCCGCCTGTGCTATTATTTCAAATCCTTTCGATTCCAAAACCGAAGTGTGGCCAGATCTAGACGGAGCCAAACAGGTTATCGAGAGGTATCAGAGTTCGTCTGTGATCGATGGCACGAAGAATGTGAATCAGGAGAGTTTTCTTTTGCAGCGGATTACGAAGGCTCGGGAGCATCTTAAGAAGCTGAGGAATGAGAATCGTGAGAAGGAGATGAGTATTCGGATGATGGAATATATGGAGAAGAAGGATTTGCCGGATGATGTGAGTGTTTCGGATTTGAAGGAATTTGAGAAGTTGATTGAGAAGAATGTGAAGGAGATTGATAACAAGATTGTTGCACTAGGTGAATTAGATTAA 480 0.4292 MTRKKVKLAFISDDSARKATYKKRKKGIIKKVSELTILCGIPACAIISNPFDSKTEVWPDLDGAKQVIERYQSSSVIDGTKNVNQESFLLQRITKAREHLKKLRNENREKEMSIRMMEYMEKKDLPDDVSVSDLKEFEKLIEKNVKEIDNKIVALGELD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05485 159 PANTHER MADS BOX PROTEIN 3 152 - -
Vivi1g05485 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi1g05485 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g05485 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g05485 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g05485 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Vivi1g05485 159 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vivi1g05485 159 Coils Coil 86 113 - -
Vivi1g05485 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05485 Vivi-Chr1 120204728 120205279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05485 1 152 MADS-box Gene Family AT5G26630 47.059 1.86e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g05485 SRF-TF 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05485 - - gmx:100792290 206.453