Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05470 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGACTTTGGTCTCCAGAAGAAGATGAGAAGCTTTTGAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCAGTCCCAAAACTAGCTGGTTTGCAGAGATGTGGCAAGAGTTGCAGGTTAAGATGGATAAATTACTTGAGACCTGATTTGAAGAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAACTTCATGCAGTACTTGGAAACAGATGGTCTCAAATTGCAGCACAATTACCAGGAAGAACCGACAATGAGATTAAGAATCTATGGAACTCATGTCTCAAGAAGAGGTTGAGACAAAGTGGCATTGATCCAAATACTCATAAACCACTCTCAGAGATTGAAAATGATAATGAAAAACCACTCACAGCAAACAAAAGCAATCAAAAAGCTTCGGTTTCGTCGAATGATGTTATGAGTTTGGTAATGGAACCTACAAAAGCTTCTATAGATCATGGTTACCCTCTAGAAGTTTCCACTTCCTCGAAGATCAACAACAATGGTAGCAGCAGCCATGAATTATTCCTAGACAGGTTCAACACCACAGGCTACTTTTCTTTCCAGAACATGAACTATGGATCAAACATCGGAATTTCGGAGAATCCAAATGCGTCTATTTGTTTCACACCATCCTCATCTTCTTCACAAATGATGTCATTGTCAGATACAAATTCTGTCATAAACTCCAACATGCTTCATTCTGTTACAACCTCAATTTTCCAAACACCAACACAAGTAAAACCAACCGTTTCCGTTTCCTCGGACGGAGTTCATAACTGGGAAGCAAGCAACTACAACACCATTAACAACACGAGCAAAACCGTTTCCAGCGCGAACTTTCTCGACAGCGGAACTCTACCGTTACAAGAAGAAATGAAATGGTCTGAATATCTCAACACGCCATTTCTCATGCAGAATCAGCCTCCTCAATCTATCTACGCCGATGCCAAACCAGAAACAGGTAATTTCATAACTGATGAATCATGTACTAGTTGGAGCCAATGCCAACCGCAACAACAACAACAACAACAACAGCAACAAGGTTTTCAACTTTCTGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGGCTTTCGGACAAACGCTATAG 1167 0.4036 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEIENDNEKPLTANKSNQKASVSSNDVMSLVMEPTKASIDHGYPLEVSTSSKINNNGSSSHELFLDRFNTTGYFSFQNMNYGSNIGISENPNASICFTPSSSSSQMMSLSDTNSVINSNMLHSVTTSIFQTPTQVKPTVSVSSDGVHNWEASNYNTINNTSKTVSSANFLDSGTLPLQEEMKWSEYLNTPFLMQNQPPQSIYADAKPETGNFITDESCTSWSQCQPQQQQQQQQQQGFQLSDIYSKDLQRFSVAFGQTL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05470 388 FunFam MYB transcription factor 68 140 - -
Vivi1g05470 388 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi1g05470 388 Gene3D - 11 67 - -
Vivi1g05470 388 SMART sant 66 114 IPR001005 -
Vivi1g05470 388 SMART sant 13 63 IPR001005 -
Vivi1g05470 388 MobiDBLite consensus disorder prediction 119 154 - -
Vivi1g05470 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vivi1g05470 388 CDD SANT 17 61 IPR001005 -
Vivi1g05470 388 MobiDBLite consensus disorder prediction 139 154 - -
Vivi1g05470 388 FunFam Myb transcription factor 11 67 - -
Vivi1g05470 388 PANTHER MYB DOMAIN PROTEIN 55 1 337 - -
Vivi1g05470 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vivi1g05470 388 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vivi1g05470 388 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi1g05470 388 Gene3D - 68 150 - -
Vivi1g05470 388 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi1g05470 388 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi1g05470 388 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05470 Vivi-Chr1 119642338 119645115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05470 1 388 MYB Transcription Factor Family AT1G09540 48.104 9.00e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g05470 Myb_DNA-binding 2.5e-15 CL0123