Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05455 ATGTCAACCACGAGGCCGAGCCAATCGTCGAACAATTCAGGGAGGTCAAGAAATAGTGCTAGGATTATAGCTCAGACGACTGTAGATGCGAAGCTTCATGCAAATTTTGAGGAGTCGGGTAGTTCGTTTGACTACTCGAGCTCGGTGCGTGTGTCTGGCTCGGTGGATGGAGATCAACAACCGAGGTCGAACAAGGTAACAACAGCTTACCTCAATCATATACAGAGAGGTAAGCAGATCCAGCCTTTTGGGTGCTTGCTGGCTTTAGACGAGAAAACTTGCAAGGTTGTTGCGTATAGTGAGAATGCGCCTGAGATGCTGACTATGGTGAGTCATGCTGTTCCCAGCGTTGGTGATCATCCTGCCCTTGGAATTGGAACTGATATAAGGACTATCTTCACTGCGCCGAGTGCTTCTGCCTTGCAGAAGGCGCTAGGGTTTGCGGAGGTTTCACTTCTTAACCCGATTCTTGTTCATTGCAAGACTTCTGGGAAGCCGTTTTACGCGATCATTCATCGGGTTACTGGCAGTTTGATCATTGATTTTGAGCCAGTGAAGCCTTATGAAGTTCCAATGACTGCTGCGGGTGCCTTGCAATCTTACAAACTTGCTGCTAAAGCAATTACAAGATTGCAATCTTTGGCTAGTGGCAGCATGGAGAGGCTTTGTGATACCATGGTTCAAGAAGTTTTTGAACTAACGGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCACGGGGAGGTGATTGCTGAGATAGCAAAGCCAGGCCTAGAGCCATATCTAGGTCTGCACTATCCGGCAACAGATATTCCCCAGGCTGCGCGGTTTCTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACATGTGAAGGTTCTTCAAGACGAAAAACTCCCATTTGATTTGACTCTGTGTGGTTCGACCTTAAGAGCTCCACATAGTTGCCATTTGCAGTACATGGCTAATATGGATTCAATTGCTTCGTTGGTTATGGCAGTAGTCGTCAATGACAGCGATGAAGACGGAGATAGCGCTGACGCAGTTCTCCCACAAAAGAAAAAGAGACTTTGGGGTTTGGTAGTTTGTCATAACACTACTCCAAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAGTTTCTGGCTCAAGTGTTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTCTTGAGAAGAATATCCTGCGCACACAGACGCTGTTGTGTGATATGTTGATGCGAGATGCACCCTTAGGTATTGTATCACAAAGCCCTAATATAATGGATCTAGTGAAATGTGATGGGGCTGCACTCTTGTACAGAAACAAGTTATGGATATTAGGAGCGGCACCGACTGAATCTCAAATACGAGAGATAGCATTATGGATGTCTGAGTATCATACAGATTCGACGGGTTTGAGTACAGATAGCTTGTCGGACGCAGGGTTTCCAGGGGCTCTTTCTCTTAGTGATACTGTATGTGGAATGGCAGCTGTTAGAATAACTTCAAAAGACATAGTTTTCTGGTTTAGGTCTCACACTGCTGCAGAAATCCGATGGGGAGGTGCAAAGCATGAACCGGGCGAACAGGACGATGGTAGGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGCTAGAAGTGTACCATGGAAAGACTTTGAAATGGATGCTATTCATTCGTTGCAGTTAATACTGAGAAATGCGTCCAAAGACACAGATATTATAGATATGAACACAAAGGCAATCAATACAAGACTAAATGATTTGAAGATTGAAGGGATGCAAGAATTGGAAGCAGTGACAAGTGAGATGGTTAGATTAATTGAAACAGCAACAGTGCCTATTTTGGCAGTGGATGTTGATGGGACGGTCAACGGATGGAATATAAAAATCGCCGAGTTGACAGGTCTTCCAGTTGGCGAAGCTATTGGAAAACATTTACTCACCTTGGTTGAGGATTCTTCAACTGATATAGTCAAGAAAATGCTCAACTTGGCACTGCAGGGCGAAGAAGAGAAAAATGTCCAATTCGAGATAAAAACACATGGGGATCAGGTGGAATCCGGTCCTATTAGTTTGATAGTTAATGCGTGTGCAAGCAGGGATCTTCGTGAAAATGTAGTCGGGGTTTGTTTTGTGGCCCAAGATATAACCGCTCAGAAGACTGTCATGGACAAATTCACCCGAATTGAAGGCGATTACAAAGCAATTGTGCAGAATCCAAATCAATTAATCCCTCCTATATTCGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATGCAGCTATGATTAAGTTAACTGGATGGAAGCGCGAGGAGGTGATGGATAAAATGCTTCTAGGAGAGGTTTTCGGAACTCAAATGTCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTCGGCATTGTACTTAATAAAGCCATGACCGGTTTGGAAACAGAAAAGGTCGCTTTTGGTTTCTTCTCTCGGAAAGGCAAGTATGTAGAGTGCCTACTTTCAGTGAGTAAGAAAATCGACGCAGAGGGCCTAGTTACCGGAGTCTTCTGTTTCTTGCAGTTAGCTAGCCCTGAGCTGCAACAAGCCTTACATATTCAGCGCCTATCCGAACAAACTGCTCTCAAGAGACTGAAAGTACTAACTTACATGAAAAGACAGATCAGGAATCCATTGGCTGGGATCGTGTTTTCCAGTAAAATGCTGGAGGGTACTGACTTGGAAACGGAACAAAAACGAATAGTGAACACTAGTTCTCAGTGCCAGCGCCAGCTTAGCAAAATTCTTGATGACTCTGATCTCGACGGTATCATTGATGGGTACTTGGATCTTGAGATGGCTGAATTCACTTTACATGAGGTACTAGTTACCTCTCTTAGTCAAGTCATGAATAGGAGTAACACAAAGGGTATCCGAATAGCCAATGATGTTGCGGAGCATATTGCGAAGGAAACCTTGTATGGTGATAGTCTTAGGCTTCAGCAGGTCTTAGCTGACTTTTTACTAATTTCCATCAATTCCACACCAAATGGAGGCCAAGTTGTTATAGCAGCCTCCTTAACAAAAGAACAGTTGGGGAAATCTGTCCATCTTGTTAACTTGGAGCTCAGCATAACACATGGTGGCAGTGGCGTGCCAGAAGCGGCGCTGAACCAGATGTTTGGAAACAATGTGCTAGAATCAGAGGAGGGTATTAGCCTACACATCAGTAGGAAGTTGTTAAAACTTATGAATGGAGATGTTCGTTATTTAAAAGAAGCAGGAAAGTCATCGTTTATCCTGTCTGTTGAACTTGCAGCAGCTCAAAAGTTGAAAGGTTGA 3375 0.4367 MSTTRPSQSSNNSGRSRNSARIIAQTTVDAKLHANFEESGSSFDYSSSVRVSGSVDGDQQPRSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYRNKLWILGAAPTESQIREIALWMSEYHTDSTGLSTDSLSDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDMNTKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAIGKHLLTLVEDSSTDIVKKMLNLALQGEEEKNVQFEIKTHGDQVESGPISLIVNACASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVAFGFFSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMKRQIRNPLAGIVFSSKMLEGTDLETEQKRIVNTSSQCQRQLSKILDDSDLDGIIDGYLDLEMAEFTLHEVLVTSLSQVMNRSNTKGIRIANDVAEHIAKETLYGDSLRLQQVLADFLLISINSTPNGGQVVIAASLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAQKLKG 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05455 1124 Gene3D - 199 562 IPR029016 -
Vivi1g05455 1124 SUPERFAMILY GAF domain-like 409 585 - -
Vivi1g05455 1124 Gene3D PAS domain 763 873 - -
Vivi1g05455 1124 CDD PAS 761 872 IPR000014 -
Vivi1g05455 1124 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Vivi1g05455 1124 SMART pas_2 749 818 IPR000014 -
Vivi1g05455 1124 SMART pas_2 619 685 IPR000014 -
Vivi1g05455 1124 CDD HisKA 899 949 IPR003661 GO:0000155|GO:0007165
Vivi1g05455 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vivi1g05455 1124 Gene3D - 957 1121 IPR036890 -
Vivi1g05455 1124 FunFam Phytochrome 406 537 - -
Vivi1g05455 1124 FunFam Phytochrome 613 744 - -
Vivi1g05455 1124 Pfam GAF domain 218 401 IPR003018 GO:0005515
Vivi1g05455 1124 PANTHER OS08G0260000 PROTEIN 67 954 - -
Vivi1g05455 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1110 IPR036890 -
Vivi1g05455 1124 Pfam Phytochrome region 414 586 IPR013515 GO:0006355|GO:0009584
Vivi1g05455 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Vivi1g05455 1124 NCBIfam PAS domain S-box protein 624 740 IPR000014 -
Vivi1g05455 1124 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Vivi1g05455 1124 SMART HKATPase_4 1006 1118 IPR003594 -
Vivi1g05455 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Vivi1g05455 1124 ProSiteProfiles Histidine kinase domain profile. 901 1120 IPR005467 -
Vivi1g05455 1124 SMART gaf_1 218 411 IPR003018 GO:0005515
Vivi1g05455 1124 Gene3D - 406 579 IPR043150 -
Vivi1g05455 1124 SMART HisKA_10 894 955 IPR003661 GO:0000155|GO:0007165
Vivi1g05455 1124 Coils Coil 398 418 - -
Vivi1g05455 1124 Gene3D PAS domain 611 749 - -
Vivi1g05455 1124 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g05455 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Vivi1g05455 1124 SUPERFAMILY GAF domain-like 198 398 - -
Vivi1g05455 1124 Pfam PAS fold 620 734 IPR013767 GO:0006355
Vivi1g05455 1124 Pfam PAS fold 750 872 IPR013767 GO:0006355
Vivi1g05455 1124 Gene3D PAS domain 73 321 - -
Vivi1g05455 1124 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Vivi1g05455 1124 Gene3D - 874 955 - -
Vivi1g05455 1124 CDD PAS 628 734 IPR000014 -
Vivi1g05455 1124 Pfam PAS fold 69 185 IPR013654 GO:0006355
Vivi1g05455 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Vivi1g05455 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Vivi1g05455 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05455 Vivi-Chr1 119302735 119307433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05455 1 1121 Histidine Kinase Gene Family AT1G09570 79.055 0.0 1873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05455 K12120 - gmx:100790763 1920.21