Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05441 ATGGAAAAGCTAATTTTCATTGGTGTTTTAGTGCTTATGGGATTCTTGACCTCAGAACAAAGAGTAACATCAACAGAATGGCAGCGAGCTCATGCAACTTCCTATGATGGACCTAAGGGGGGTGCATGTGGGTACGGAGATCAATTAATAAATGATTATGGAAATAACACAGCTGCTTTGAGTATGGCTTTGTTTAATGATGGGAAATCATGTGGTGGTTGCTATCAGATTGTTTGTGATGCAACTCAAGATCCTCAATGGTGCCTTAAGAGAACTTCCGTAACAGTTACTGCCACTAATTTTTGTCCCCCAGAACCTAGCAAACCTAATGACAATGGTGGTTGGTGTAATCCTCCTAGACCACATTTTGACTTGTCTCGAACCGCTTTCGAGTCCATCGCAATTTACGAGGCTGGGATTGTCCCAATCTTATACCAAAAAGTTGGGTGCCAAAGAAATGGAGGGATAAAATTTACAATGAATGGGAATGATTATTTTGAGCTAGTGGTTATAAGCAATGTAGGAGGAGCAGGGGATATATCCAATGTTTGGATCAAAGGGTCAAAAATGGAAAATTGGGAATCTATGTCAAAGAATTGGGGTGCTAACTGGCAAAGCTCAAGGTATCTAAATGGTCAGAGTCTTTCCTTCAGAATTCAACTAAGTGATGGAAAAAGTGTTACAGCTAAAGATGCGGTACCCTCTAATTGGAGATTTGGTCAAACTTTCAGCAGCAATGTTCAGTTCTGA 750 0.4053 MEKLIFIGVLVLMGFLTSEQRVTSTEWQRAHATSYDGPKGGACGYGDQLINDYGNNTAALSMALFNDGKSCGGCYQIVCDATQDPQWCLKRTSVTVTATNFCPPEPSKPNDNGGWCNPPRPHFDLSRTAFESIAIYEAGIVPILYQKVGCQRNGGIKFTMNGNDYFELVVISNVGGAGDISNVWIKGSKMENWESMSKNWGANWQSSRYLNGQSLSFRIQLSDGKSVTAKDAVPSNWRFGQTFSSNVQF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05441 249 Pfam Lytic transglycolase 57 145 IPR009009 -
Vivi1g05441 249 Gene3D - 14 151 IPR036908 -
Vivi1g05441 249 Gene3D - 152 249 IPR036749 -
Vivi1g05441 249 Pfam Expansin C-terminal domain 156 234 IPR007117 -
Vivi1g05441 249 SUPERFAMILY PHL pollen allergen 152 245 IPR036749 -
Vivi1g05441 249 PANTHER EXPANSIN-A15 11 246 IPR002963 GO:0009664
Vivi1g05441 249 SMART dpbb_1 57 145 IPR007112 -
Vivi1g05441 249 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Vivi1g05441 249 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Vivi1g05441 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Vivi1g05441 249 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Vivi1g05441 249 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Vivi1g05441 249 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Vivi1g05441 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Vivi1g05441 249 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Vivi1g05441 249 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Vivi1g05441 249 FunFam Expansin 155 249 - -
Vivi1g05441 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Vivi1g05441 249 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Vivi1g05441 249 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Vivi1g05441 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vivi1g05441 249 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Vivi1g05441 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 155 IPR007112 -
Vivi1g05441 249 CDD DPBB_EXPA_N 26 150 - -
Vivi1g05441 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 245 IPR007117 -
Vivi1g05441 249 SUPERFAMILY Barwin-like endoglucanases 20 173 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05441 Vivi-Chr1 119021469 119022721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05441 9 249 Expansin Gene Family AT4G01630 64.257 6.73e-118 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05441 - - gmx:100783801 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05441 1 119021469 119022721 Vivi1g05441 1 119021469 119022721 ECH
Vivi6g04727 6 150283541 150284628 Vivi1g05441 1 119021469 119022721 PCT