Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05437 ATGGGTAACGGCACTTCTCGTGTTGTTGGTTGTTTGGTGCCATTCAATGGTAAGAATGGTGTTGATTTGGAGTTTTTGGAGCCATTAGATGAAGGTTTGGGTCATTCTTTTTGTTATGTAAGACCGACGTTGTTTGAATCTCCTGCTATTAGTCCGTCGAATTCGGAGAGGTTTACGGTTGATTCGAGTACACTTGATTCTGAAACGTTGAGTGGTTCGTTTAGGCATGATAGCATGGAGGATTCTAACTGTTCTGGTTTGCATAAGCCAGCTAAGAATTTTCCTGAAACTACGTTTAAAACGATTTCGGGGGCTTCTGTTAGTGCTAATGTTTCCACAGCTAGGACTGGTGGTAACCAGAGTGCATTGTTTGCTGGTGATTTCTTGGAACCTGCTGCTTCATTTGAGGGGACTGCTTCATTTGCTGCGATTCCTTTGCAGCCGGTTCCTCGAGGTTCTGGACCTTTGAATGGTTTTATGTCTGGTCCTTTGGAGAGAGGCTTTGCTTCAGGTCCATTAGATAGAAGTGGCGGTTTCATGTCTGGGCCGATTGAGAAAGGAGTTATGTCAGGTCCTCTTGACGATACTGATAAATCAAACTTTTCGGCGCCTCTTGCGCGTGGTCGCAGGAGGCCGCGTCTACAGCATCTCATGAGAAGTGTTAGTGGACCGATGAAGAACACGTTTTCTCGAACGTTCTCTAAAAATTCCATGGGTGGAAGTTGGATGCAAAGGTTATTCTTTCAGCCGGTTACTCAAATGGCATGGCATTCCAGAGACACGAAGTGTAAGCCAGAAGTGCCTAGGAACTGTGGTATTGACGTTGGATCATACGAAGCTGAGTATAAACACACACATAATTTGCAGTGGGCTCAAGGAAAGGCTGGTGAAGATAGGGTTCATGTCGTTCTTTCAGAAGAACAAGGGTGGTTGTTTATTGGGATATATGACGGTTTTAGTGGACCAGATGCACCTGATTTTTTGATGAGCCATCTTTATAGATTTCTAGACAAAGAACTCGAAGGCTTACTTTGGGATTATGAAGATAATCCTGTTGACGTACTTAAACCTGAGGTCCCTGAAACTATAAAAGCTACCGTTGCTCCAGAAGGCAGTACGAATGAAATGTCCGAGGCTCATGCTAAATCTAATCATGAATGTTTTGAAGCTTCTTCTTGTCCTGAATTAATTAAGGACCAATCATTTAACAGTGAGATAGTCGAAGAAAATGCTGAAGTTAATGTAAATGTTGAACACCAGTTATCTAATTGTGGAAGTAACTCTACTGTTTCTGATTCTGTTCAACATGGAAAGTTGACCGGGAAAGGTAGAAAAAGTTTGAGGCTTTATGAACTACTTCAAATGGAATCTTGGGATGATCAATGTAATGATTCTTCAGTTCCGCAGGAAGCAAAACTAGATGGGCATATGAGATCTTGCTCGTCTAATGCAAGAGAAGATGGCTTTAGACATCAAGACGAAGGTCCGTCTACATCAGGAGAAAATGGAGGCACTAGGTTTGATTCAACCGATAAGGAGCACCAAGATGTTTTTTCTGTATCAATACAGAATTCAAAGAAGTCATTCAGTGCAAAAATTAAAAAAATGTACAAGAAGCCAAGGTCCTTGTGTAAGAAACTCTTTCCTTGGAGTTATGATTGGCACAGGGAGGAGAGTAGCGTTGACGAGAAAATAATAGAAGCCTCGGGACCTATTAGGAAATGCAGGTCTGGAGTAGATCATAATGCAGTTTTAAGAGCAATGGCTCGAGCCCTTGAAAGAACAGAAGATGCATACATGGAAATGGCGGAGCATAATCTGGAAAAAAATCCAGAACTTGCTATAATGGGATCATGTGTTCTAGTGATGTTGATGAAGGATCAAGATGTTTATGTCATGAATCTGGGAGATAGTCGTGTGATTTTGGCTCAAGAAAGATCAAACGATCGTCATCCTAATTCTATTTCTGTCAAGGATGACCTTAGGCATAGAAATCGATCCAGAGAGGCATTAGTACGCATGGAGCTGGATAGGATTTCAGAGGAGTCCCCAATTCATAACCAAAACAATCATGTTATCAAGATGAACAAAAACCGTGAGATATCCTTTTGCAAATTAAAAATGAGGGCTCTGCAGCTTTCTACAGATCACAGCACCAGTATTGAAGAGGAAGTATGCAGAATAAGAGCAGAACACCCTGATGATAGTCAAGCCATATTAAACGATCGAGTGAAAGGACATTTAAAAGTTACTAGAGCATTTGGTGCCGGTTTCTTGAAGAGGCCGTCTTTTAACGAAGCTCTACTGGAGGTGTTTCAAGTTAATTATATCGGCTCTGCTCCTTACCTAAGTTGCACCCCTTCTGTTCTTCACCATCGACTTTCATCAAGTGATCGATTCTTGGTACTCTCCTCTGACGGGCTTTACCAATATTTCAGCAATGAAGAGGTAGTTGCCCATGTCACATGGTTCATGGAAAATGTCCCAGAAGGCGATCCTGCACAATACCTTATTGCAGAGCTTCTCTTCTGTGCTGCTAAAAAGAATGGAATGGACTTCCATGAATTGCTTGATATTCCTCATGGAGATCGGCGTAAATATCACGATGATGTATCAGTCATGGTGGTTTCTTTGGAGGGAAGGATTTGGAGATCATCGGGATAA 2664 0.4197 MGNGTSRVVGCLVPFNGKNGVDLEFLEPLDEGLGHSFCYVRPTLFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEDSNCSGLHKPAKNFPETTFKTISGASVSANVSTARTGGNQSALFAGDFLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRSGGFMSGPIEKGVMSGPLDDTDKSNFSAPLARGRRRPRLQHLMRSVSGPMKNTFSRTFSKNSMGGSWMQRLFFQPVTQMAWHSRDTKCKPEVPRNCGIDVGSYEAEYKHTHNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFLDKELEGLLWDYEDNPVDVLKPEVPETIKATVAPEGSTNEMSEAHAKSNHECFEASSCPELIKDQSFNSEIVEENAEVNVNVEHQLSNCGSNSTVSDSVQHGKLTGKGRKSLRLYELLQMESWDDQCNDSSVPQEAKLDGHMRSCSSNAREDGFRHQDEGPSTSGENGGTRFDSTDKEHQDVFSVSIQNSKKSFSAKIKKMYKKPRSLCKKLFPWSYDWHREESSVDEKIIEASGPIRKCRSGVDHNAVLRAMARALERTEDAYMEMAEHNLEKNPELAIMGSCVLVMLMKDQDVYVMNLGDSRVILAQERSNDRHPNSISVKDDLRHRNRSREALVRMELDRISEESPIHNQNNHVIKMNKNREISFCKLKMRALQLSTDHSTSIEEEVCRIRAEHPDDSQAILNDRVKGHLKVTRAFGAGFLKRPSFNEALLEVFQVNYIGSAPYLSCTPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFCAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05437 887 SMART PP2C_4 281 876 IPR001932 -
Vivi1g05437 887 CDD PP2Cc 584 878 IPR001932 -
Vivi1g05437 887 Gene3D - 492 884 IPR036457 -
Vivi1g05437 887 MobiDBLite consensus disorder prediction 479 494 - -
Vivi1g05437 887 Gene3D - 269 440 IPR036457 -
Vivi1g05437 887 SUPERFAMILY PP2C-like 293 879 IPR036457 -
Vivi1g05437 887 Pfam Protein phosphatase 2C 710 826 IPR001932 -
Vivi1g05437 887 Pfam Protein phosphatase 2C 596 649 IPR001932 -
Vivi1g05437 887 MobiDBLite consensus disorder prediction 461 510 - -
Vivi1g05437 887 ProSiteProfiles PPM-type phosphatase domain profile. 281 878 IPR001932 -
Vivi1g05437 887 PANTHER PROTEIN PHOSPHATASE 2C 284 877 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05437 Vivi-Chr1 118982605 118988300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05437 1 887 PP2C-type Phosphatase Gene Family AT2G46920 63.657 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05437 - - pcin:129315875 1373.99