Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05432 ATGGCTTCTTCATTCTCAACTCAGCTGGTGCAGAGTCAGAACCTACTTCCTCGCTTTCATGCTGTCCAGAGGAAGCCACAAGTAGTTTGTAGCATTGGATGCAGCAAATTGTCATCAAGATATCATTATGCGCCAAGGCTTTCTGTTTCACAACAATCTAAAGCCAAATCAGTCACTTCTCGGAGAATAACATGTGCTAGTGCTCAGGGAGATGTTGCGGAGCTGCAAGCTAAAGTGACAAGCAAATGTTTCTTTGATATAGAAATTGGAGGTGAATCTGCTGGAAGGATTGTAATTGGTCTATTCGGAGATGCTGTTCCCAAAACAGTTGAGAATTTCAAGACTTTGTGTATAGGAACGAAAGGATATGGTTACCAAGGAAGCTTCTTCCATCGTATAATACCAAATTTCATGATTCAGGGAGGTGACTTCACCGAAGGAAATGGAACTGGTGGAGTCAGTATCTTTGGTTCTAAATTTGAAGATGAGAATTTTGATTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCGAATGCTGGTCCTAATACTAATGGCAGTCAGTTTTTTATATGCACTGTACCGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCATTGAAGGACTGGATATTGTGAAGCAACTCGAATCACAGGAGACAAGCAGCTATGACAATAGTCCCAAGAAACAGTGCAAAATTGCCAAGTCTGGAGAACTGCCTTTAGATGGTTGA 744 0.4194 MASSFSTQLVQSQNLLPRFHAVQRKPQVVCSIGCSKLSSRYHYAPRLSVSQQSKAKSVTSRRITCASAQGDVAELQAKVTSKCFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLCIGTKGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIFGSKFEDENFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDIVKQLESQETSSYDNSPKKQCKIAKSGELPLDG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05432 247 MobiDBLite consensus disorder prediction 223 247 - -
Vivi1g05432 247 CDD cyclophilin_ABH_like 81 241 - -
Vivi1g05432 247 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 84 242 IPR002130 GO:0000413|GO:0003755
Vivi1g05432 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 216 IPR002130 GO:0000413|GO:0003755
Vivi1g05432 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 116 IPR002130 GO:0000413|GO:0003755
Vivi1g05432 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 142 IPR002130 GO:0000413|GO:0003755
Vivi1g05432 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Vivi1g05432 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 200 IPR002130 GO:0000413|GO:0003755
Vivi1g05432 247 FunFam Peptidyl-prolyl cis-trans isomerase 69 247 - -
Vivi1g05432 247 SUPERFAMILY Cyclophilin-like 73 243 IPR029000 -
Vivi1g05432 247 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 85 240 IPR002130 GO:0000413|GO:0003755
Vivi1g05432 247 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 125 142 IPR020892 GO:0003755|GO:0006457
Vivi1g05432 247 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 82 243 - -
Vivi1g05432 247 Gene3D - 70 246 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05432 Vivi-Chr1 118949482 118951305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05432 95 237 U-box Gene Family AT5G67530 48.611 3.88e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05432 K03768 - gmx:100526955 356.295