Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05428 ATGAGAATGAAGCTGCTGATTTTGTTTGCATGCTTACTTTCTGGGTTTATCTCCTCTAGATCTGAGACACTGTTTTCCTTCTCACAAAACGATGTCGTCTCAGCTAATCCATTGCAACTTATGGTTAACCTCACTCTCATTCAAGGAGCTGATTCCAAAGGAGCTGTTTGTTTGGATGGAACATTGCCCGGTTACCATTTGGATCGTGGATTTGATTCTGGTGCGAATAGTTGGCTTATTCATCTTGAGGGAGGAGGATGGTGTAACACAATCAGAAATTGTGTATATAGAAAAAAGACTCGTCGTGGTTCCTCCAAATACATGGAAAATCAAATACCATTCACAGGAATATTGAGTAATAAACCAGAAGAAAACCCTGATTTCTTTAACTGGAATAGAGTCAAATTAAGGTACTGTGACGGAGCATCTTTTACTGGAGATAGTGAAAATGAGGCGGCAGGGCTTCAATTTCGAGGACAAAAAATTTGGCTAGCTGCAATAGAGGAATTGATGTCTCAAGGAATGGATAATGCAGAACAGGCCCTTCTTTCTGGATGTTCTGCGGGTGGTCTTGCGTCCATAATACATTGTGACGAGTTCCAAAGCTTGTTACCAAAATCTTCCAAAGTGAAGTGTTTTAGTGATGCGGGTTTTTTTCTTGATGCAATTGATGTATCTGGAGGACGCTCATTGAGAAATCTGTTTGAAGGCGTAGTTCAGTTACAGGAAGCACAAAAAAATCTGCCAAAAAATTGTCTCAACAAACTGGACCCAACTTCGTGCTTCTTTCCTCAGAATTTGGTTGAACATATTGAGACGCCATTGTTTCTACTCAATGCGGCTTATGATGTGTGGCAGGTTCAAGCCAGTTTAGCCCCAGCGACAGCCGATCCTCTTGGCTCTTGGAATGAATGCAAATCAAACCATGCAAATTGTAGCTCGTCTCAAATTCAGTTCCTCCAAGACTTCAGAAATCAAATGGTTGACGATTTGAAAGATTTTTCAAGACCGTCTCAAACTGGACTTTTCATAAATTCCTGTTTTGCTCATTGCCAGTCGGAGAGACAGGAGACATGGTTCGCGGATGACTCTCCTCTTCTCGAGGACAAGCCAATTGCAGTTGCTGTTGGAGACTGGTATTTCGACCGGGAAGTTGTCAAATCTATTGACTGTCCTTACCCTTGTGACAATAATTGCCATAATTTGGTGTTTAGAAGAGTATAA 1224 0.4142 MRMKLLILFACLLSGFISSRSETLFSFSQNDVVSANPLQLMVNLTLIQGADSKGAVCLDGTLPGYHLDRGFDSGANSWLIHLEGGGWCNTIRNCVYRKKTRRGSSKYMENQIPFTGILSNKPEENPDFFNWNRVKLRYCDGASFTGDSENEAAGLQFRGQKIWLAAIEELMSQGMDNAEQALLSGCSAGGLASIIHCDEFQSLLPKSSKVKCFSDAGFFLDAIDVSGGRSLRNLFEGVVQLQEAQKNLPKNCLNKLDPTSCFFPQNLVEHIETPLFLLNAAYDVWQVQASLAPATADPLGSWNECKSNHANCSSSQIQFLQDFRNQMVDDLKDFSRPSQTGLFINSCFAHCQSERQETWFADDSPLLEDKPIAVAVGDWYFDREVVKSIDCPYPCDNNCHNLVFRRV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05428 407 PANTHER NOTUM-RELATED 27 401 IPR004963 GO:0016787
Vivi1g05428 407 Pfam Pectinacetylesterase 38 385 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05428 Vivi-Chr1 118919626 118922405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05428 28 406 Carbohydrate Esterase AT1G57590 69.921 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05428 K19882 - gmx:100786972 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04757 6 150748454 150751036 Vivi1g05428 1 118919626 118922405 ECH
Vivi1g05428 1 118919626 118922405 Vivi6g04757 6 150748454 150751036 ECH
Vivi1g05428 1 118919626 118922405 Vivi1g05428 1 118919626 118922405 ECH
Vivi1g00881 1 18872287 18876235 Vivi1g05428 1 118919626 118922405 ECH
Vivi6g04721 6 150245270 150248300 Vivi1g05428 1 118919626 118922405 PCT