Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05416 ATGGGTAAACCTTCCACTTCCTCTTCCTCTTCTTCCAACAGTAGAAGAAGAACTCACAATTCCTCCAATCTTTCTTCCTCTATCACCCATCAAAACATCGATGAACAACAGTATCTCCATCATCATCCTGATCTTAACCTTGGATTGAGCATTTCCGGAGGACATTGGCAACCATTCCAGCAGCAACAAGGTGGCGGTGAAGTTAACGACTGTGGCGGCGATTACGGTAGCTTCTTTGTGAAGGTTTACATGGAAGGGATTCCTATTGGGAGGAAACTTAATTTGTTAGCTCATAATTGCTATCAAGAGTTGGTTAATACTCTTGAACATATGTTCGACACTACGATACTATGGGGCACTGAGATGGATGGAATGCAATCAGAGAGATGTCATGTGCTAACTTATGAAGATGGTGAAGGAGATTTGATTATGGTTGGGGATGTCCCTTGGGAGATGTTCTTGTCATCTGTGAAGAGGTTGAAGATTACTAGAGTGGATGCATTCGGGTTTTGA 513 0.4269 MGKPSTSSSSSSNSRRRTHNSSNLSSSITHQNIDEQQYLHHHPDLNLGLSISGGHWQPFQQQQGGGEVNDCGGDYGSFFVKVYMEGIPIGRKLNLLAHNCYQELVNTLEHMFDTTILWGTEMDGMQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05416 170 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 164 IPR003311 GO:0005634|GO:0006355
Vivi1g05416 170 MobiDBLite consensus disorder prediction 1 26 - -
Vivi1g05416 170 Pfam AUX/IAA family 74 164 IPR033389 -
Vivi1g05416 170 SUPERFAMILY CAD & PB1 domains 76 162 - -
Vivi1g05416 170 Gene3D - 72 169 - -
Vivi1g05416 170 ProSiteProfiles PB1 domain profile. 77 167 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05416 Vivi-Chr1 118516631 118517854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05416 81 162 B3 DNA Binding Superfamily AT4G23980 36.585 5.84e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g05416 AUX_IAA 7e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05416 K14484 - gmx:100781660 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05416 1 118516631 118517854 Vivi1g05416 1 118516631 118517854 ECH
Vivi6g04716 6 150031691 150032736 Vivi1g05416 1 118516631 118517854 PCT