Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05408 ATGGAAAGTAAAATAATTGTCTCAGCAGTTTCTCTCATTCTTGTAGTTGGTGTTGCATTAGGTGTTGTTGCTCTTGTTCGAACCAACCAGCCAGGTGACAGTGGAGGCGGCGGCGATTTGAATGCGCATACTAAAGCGGTTCAGGCCGTGTGTCAAAACAGCGATGACAATAAATTCTGTGTTGATACTCTAACTCCGGTTAACACATCGGACCCAAATGATTACATAAAAGCCGTTGTTAAAAGCTCCTTGGAAACTGTCTTCAAAGCTTTAAACATGAGCGATAAGCTCATAATTGAGAATGACAAAAAAGAAAACACCACAAAGATGGCACTTGAGGATTGTAAAGACCTGTTACAATTCGCAATCGATGAGTTACAGGCTTCTAATATTTTAGTTAATGACGCCCACGGTCAGAATGCGAACGAGCGCGCTGCTGATCTTAAGAACTGGTTGGGTGCTGTCATTGCGTACCAACAATCATGTCTTGATGGTTTTGAAACAGACGGCGAAAAGAAGGTTCAAACCGAGTTACAAACTGGTAGTTTGGATCAGGTGGAGAAACTTACCGGGTTGGCGCTTGATATTGTGACTGCAGTTTCGAAAGTACTATCTACGTTGAATTTGGATTTGAATGTGCAACCTTCGCATCGTCGTCTTTTTGAGGTGGATAGTGATGGTTACCCTGAATGGATGACTGGCCCGGATCGTAAGTTGTTGGCTGATATGAGTACAGGAGCTGCCGTTACGCCTAATGTGGTTGTTGCCAAAGATGGTAGTGGCAAATTTAAGACTGTTCTTGAGGCGATTAATTCGTACCCCAAAAATCATGTTGGTAGATATGTTATATACGTTAAGGCCGGTGTCTATGACGAATATATTACGATTGACAAGAAGAAGAAGAAAATTTTAATGTACGGTGATGGCCCTACTAAGACTATTATCACCGGAAAGAAAAATGTTGTTGATGGTTGGAAGACCATGAGATCTGCTACATTCTCAAATGTTGCTGAAGATTTCATTTGCAAGGCAATAGCATTTGAGAATACAGCAGGACCAGACAAGCACCAAGCAGTGGCATTACGAGTGCAAGGCGACCGATCGGCTTTCTACGACTGTGCCATGCGGGGTTACCAAGACACATTATACGCGCACGCCCATCGTCAGTTTTACAGAAACTGCGAAATTTCTGGAACAGTGGATTTCATTTTCGGCTACGGATCAACACTGATACAAAACTCGAAGATAATAGTCCGAAAACCCAGTGCAAATCAGCAAAACATTGTTGTAGCCGACGGAACAATTCAAAAGAACATGCCTACAGGAGTTGTCATGCAAAACTGTGAGATCATGCCGGAACCAGCACTACAGGCAGATAGATTGAAGGTGAAATCATATTTGGCAAGACCATGGAAAGCATATTCTAGGGCAATATTCATGGAGAATATCATCGGTGATTTGATTCAACCAGTGGGATTTCTTCCTTGGAACGGGAATCTATTTCTCGACACATGTTACTTTGCCGAGTATGCTAATACTGGACCTGGTGCCGATGTTAAGGCAAGAGTTAAGTGGAGCAAAGGTGTTCTTAGCAAAGCTGATGCAACTAAATACACTGCTGATCAATGGATTCAAGGTGGAATTTGGTTGCCTGCTACTGGTATACCATTTGAGCTTGGGTTCTCTAAACCTGGAAGCTAA 1701 0.4274 MESKIIVSAVSLILVVGVALGVVALVRTNQPGDSGGGGDLNAHTKAVQAVCQNSDDNKFCVDTLTPVNTSDPNDYIKAVVKSSLETVFKALNMSDKLIIENDKKENTTKMALEDCKDLLQFAIDELQASNILVNDAHGQNANERAADLKNWLGAVIAYQQSCLDGFETDGEKKVQTELQTGSLDQVEKLTGLALDIVTAVSKVLSTLNLDLNVQPSHRRLFEVDSDGYPEWMTGPDRKLLADMSTGAAVTPNVVVAKDGSGKFKTVLEAINSYPKNHVGRYVIYVKAGVYDEYITIDKKKKKILMYGDGPTKTIITGKKNVVDGWKTMRSATFSNVAEDFICKAIAFENTAGPDKHQAVALRVQGDRSAFYDCAMRGYQDTLYAHAHRQFYRNCEISGTVDFIFGYGSTLIQNSKIIVRKPSANQQNIVVADGTIQKNMPTGVVMQNCEIMPEPALQADRLKVKSYLARPWKAYSRAIFMENIIGDLIQPVGFLPWNGNLFLDTCYFAEYANTGPGADVKARVKWSKGVLSKADATKYTADQWIQGGIWLPATGIPFELGFSKPGS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05408 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 201 IPR035513 -
Vivi1g05408 566 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Vivi1g05408 566 PANTHER PECTINESTERASE 15 551 - -
Vivi1g05408 566 SMART PMEI_2 42 196 IPR006501 GO:0004857
Vivi1g05408 566 FunFam Pectinesterase 43 201 - -
Vivi1g05408 566 Pfam Pectinesterase 252 546 IPR000070 GO:0030599|GO:0042545
Vivi1g05408 566 FunFam Pectinesterase 246 561 - -
Vivi1g05408 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 200 IPR035513 -
Vivi1g05408 566 NCBIfam pectinesterase inhibitor domain 19 197 IPR006501 GO:0004857
Vivi1g05408 566 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Vivi1g05408 566 Gene3D - 246 561 IPR012334 -
Vivi1g05408 566 CDD PMEI-like_3 49 202 - -
Vivi1g05408 566 Pfam Plant invertase/pectin methylesterase inhibitor 46 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05408 Vivi-Chr1 118304560 118306600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05408 4 561 Carbohydrate Esterase AT3G05610 39.787 1.75e-140 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05408 K01051 - gmx:100820142 814.298