Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05407 ATGAACGGAAAAGTACTAGTCTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATCGGTGTTGTTGTCGTCGTTAACAAAAAGGGCAGTGATCCTCAATTAGCAGCACACGAGAAAAATGTGCAATCCATGTGTCAAGCAACTGAAGATCAAAAACTTTGTCATGACACTCTTATCACCGCGAAACCTGCCAATGCCTCTGATCCAACAGCTTATTTAGCAGCTGTAGTTCAAGCGAGCGCGCAAAGCGTTATTGCTGCGTTGAATATGAGTGATAGGCTATCGCTTGAACACGGTGACAAAGATCCCGGTATCAAAATGGCACTTGATGATTGCAAAGACTTGATGCAATTTGCTCTCGACAGTCTTGAAGCCTCGGCTAGTTTGGTTCGCGATAACAACATTCAAGCGATTCATGAACAGACGCCTGATTTTAGAAACTGGTTGAGCGCTGTTATATCGTACCAACAGTCGTGTATGGAAGGGTTTAATAACGAGACGAACGGCGAGGATAAGATCAAACAACAGTTGCAGACAGATAGTTTGGACCAAATGGAGAAACTAACTGGCATCACACTTGACATTGTAGCTAGCATGGCTAACATTCTTCAGGCTTTCGATTTGAAGCTGGAATTGAATCCAGCTTCTCGTCGTCTTCTGGACGCTAACGAGATTGACGATGAAGGACTGCCCACATGGTTCTCGGCTACGGATCGCAAGCTACTAGCTAAACACCCAGGTGGAGGAGGTCCTCCACCTAATGCAGTGGTTGCTAAAGACGGTAGCGGTAAATTTAAGTCAGTTAAAGAGGCTATTGATTCCTACCCAAAGGGATTCAAAGGGAGATACATTATCTATGTTAAGGCCGGAGTCTACGACGAGTACATCACCGTTCCGAAAAAGTCTATTAATATTCTTATGTACGGTGATGGCCCGACAAAGACCATTATCACCGGTCACAAGAACTTCGCCGATGGCGTGAAGACAATGCAGACAGCCACATTCGCAAATACTGCGCCAGGATTCATCGCAAAATCAATAGCATTCGAGAACACAGCTGGTCCAGCAAAACATCAAGCAGTGGCATTTAGAAACCAAGGAGACATGTCAGCATTCTTCGACTGCGCCATGCATGGTTTCCAAGACACATTATACGTCCAAACAAATCGTCAATTCTACCGCAACTGTGAAATCTCTGGCACAGTAGACTTCATATTCGGCGCATCTCCAACCGTAATCCAAAACTCAAGAATCATCGTCAGAAAACCAGGACCTGGTCAGTTCAACACAGTAACCGCAGACGGAACAAAACAACGTAACATGGCCACAGGAATCGTGATCCAGAACTGCGAAATCGTTCCAGAGAAAGCTTTGTTCCCGGTCAGGATGCAGTTCAAATCATATCTAGGCAGGCCATGGAAAGACTACTCTAGGACAGTTGTTATGGAATCAAATATCGGCGATCTTATCGTACCAGAAGGGTGGAGTCCTTGGGCTGGAACTCAATTTCTGAATACATTGTATTATGCTGAGTATGCTAATACTGGACCTGGTGCTAATCTTAATGGAAGGGTTAAGTGGAAAGGTTATCATCCAAATATTAATAGGAATGAAGCTGCTCAATTCACTGCAGGACAATTCCTTAGAGCTGGACCTGCTGGAAGAGCTGAGGATTGGTTGAGGGCTACTGGTGTTCCTTATGTACTTGGATTTGGAAAGTAG 1725 0.4487 MNGKVLVSGVSIILVVGVAIGVVVVVNKKGSDPQLAAHEKNVQSMCQATEDQKLCHDTLITAKPANASDPTAYLAAVVQASAQSVIAALNMSDRLSLEHGDKDPGIKMALDDCKDLMQFALDSLEASASLVRDNNIQAIHEQTPDFRNWLSAVISYQQSCMEGFNNETNGEDKIKQQLQTDSLDQMEKLTGITLDIVASMANILQAFDLKLELNPASRRLLDANEIDDEGLPTWFSATDRKLLAKHPGGGGPPPNAVVAKDGSGKFKSVKEAIDSYPKGFKGRYIIYVKAGVYDEYITVPKKSINILMYGDGPTKTIITGHKNFADGVKTMQTATFANTAPGFIAKSIAFENTAGPAKHQAVAFRNQGDMSAFFDCAMHGFQDTLYVQTNRQFYRNCEISGTVDFIFGASPTVIQNSRIIVRKPGPGQFNTVTADGTKQRNMATGIVIQNCEIVPEKALFPVRMQFKSYLGRPWKDYSRTVVMESNIGDLIVPEGWSPWAGTQFLNTLYYAEYANTGPGANLNGRVKWKGYHPNINRNEAAQFTAGQFLRAGPAGRAEDWLRATGVPYVLGFGK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05407 574 Pfam Pectinesterase 255 550 IPR000070 GO:0030599|GO:0042545
Vivi1g05407 574 SMART PMEI_2 37 196 IPR006501 GO:0004857
Vivi1g05407 574 CDD PMEI-like_3 44 202 - -
Vivi1g05407 574 FunFam Pectinesterase 38 201 - -
Vivi1g05407 574 Gene3D - 253 572 IPR012334 -
Vivi1g05407 574 SUPERFAMILY Pectin lyase-like 252 569 IPR011050 -
Vivi1g05407 574 PANTHER PECTINESTERASE 18 562 - -
Vivi1g05407 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Vivi1g05407 574 NCBIfam pectinesterase inhibitor domain 21 198 IPR006501 GO:0004857
Vivi1g05407 574 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Vivi1g05407 574 FunFam Pectinesterase 251 572 - -
Vivi1g05407 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vivi1g05407 574 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05407 Vivi-Chr1 118299115 118301239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05407 1 572 Carbohydrate Esterase AT2G47030 40.783 7.71e-141 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05407 K01051 - gmx:100775246 886.33