Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05402 ATGGAAGCTAGATTGGGTGCTGAGGGTTATAATTTTTATGGTGTTGTTGGTGGTTCATCTGATTTGAGTAGTATGGGGAAGAGAGCTAGAGAGTGGAGTTTGAATGATTGGAGATGGGATGGTGATTTGTTTATAGCTAGCCGTGTGAATCCGGTGCCGGTGGATAGTCTGAGAGTGGATAGTCTGAGAGTGGGACAACAGTTTTTCCCTATTGGGTCTGGGATCCCCGTGGCTGGGGGTTCCTCTAACACCTCTTCTTCATGCTCTGAGGAAGGAGATGTTGAGAATCATAAAAGGAACAAGGAAGGGGAGAGGAAAAGGAGAGTTATTGTTCTGGAAGATGATGGTTTGAATGAGGAAGCTGGTGCCCTTAGCTTAAATCTTGCAGGACGTGCTTCACCGGTGGTGGAAAGGGAGATTGCAAGCTGGGATGGTATGAGTGGGAAGAAAAGCAAAGTAGCTGGAGGTACTTCGAATCGAGCTGTTTGTCAGGTTAAAGATTGTGGTGCAGATCTGAGCAGAGGTAAGGATTATCACAGACGGCATAAAGTTTGTGAGATGCATTCTAAGGCTAGTAAGGCACTTGTGGGGAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACTTACTTCAAGAGTTCGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCTGGCCATAATAAACGGAGAAGGAAAGCAAATCATGAAGCTGTTCCTAATGGAAGTCCTACAAATGATGATCAGACCAGTAGTTATCTCTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGCCTACAGATCAGGATCTTCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGATGAGCAAGGTAGCAAGAACTTGTCAAATCTTTTGCAGGAACAAGAGATTTTGTTGAGAGAAGGGGATTCTTCTAGGAAGTCAGAGATGGTGTCAGCTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGTTATAGCACAACACCAAACTTTATCTATGAATAAAAGGCAACAAGAAATGATGCATGCTCATGATGCTAGCACCGTTGATCATCAGCTCGTATCTTCAATAAAGCCCAGCATTTCAAACAGTCCTCCGATTTACTCAGAAGTCAGAGATAGTAGTGCACAAATAAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCATGGAAGATCTAGAAATATTGCCAGTTTCTACAAATATTGGCACTAGCTCTGTTGATTATCCATGGACACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAACCTCAGAGCCGTACAGACCGGATTGTTTTTAAGCTCTTTGGTAAAGAGCCAAATGAATTTCCTCTTGTACTTAGAGCACAGATTCTTGATTGGTTATCCCACAGTCCTACCGATATTGAGAGCTACATACGACCTGGTTGTATTGTTTTGACTATTTATCTGCGTCAGGCTGAGGCTGTGTGGGACGATCTGTGCTGTGATTTGACTTCCAGTTTGAGTAAGCTGCTGGATGTCTCAGATGATACATTTTGGAGAAGTGGATGGGTTCATTTCAGGGTGCAGCATCAAATGGCATTCATTTTCAATGGTCAAGTTGTAATAGATACATCACTACCTTCTAGAAGCAGAAATTATAGCAAGATTTGGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCAGTTAAAGGTGTCAACCTAATGCGCCCTGCCACAAGGTTAATGTGTGCTTTAGAAGGAAACTATCTGGTGTGTGAAGATGCTCATGAGTCAACAGATCAATGCTCCAAGGAGCTCGATGAACTTCAGTGCATTCAATTTTCTTGTTCAGTCCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATAGTTGCAGAGGAGGATGTTTGCTCAGAGATTCGTGTGCTTGAGCCTTTACTAGAACTAAGTGAAACTGCTCCAGATATTGAAAGGACTGGAAAAATTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGTCAATTGAAATATAGGATGGTTCACTTGAATTCCGATGTAGATCTCTTTCCATTAGAACGGTTCACTTGGCTTATGGAGTTTTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACATACTGCTTGATGAAACTGTGAACAAAGGAGATCACCCTACCCTGTATCAAGCACTTACAGAGATGGGCCTCCTTCACAGAGCCGTAAGGAGAAATAGCAAGCAGTTAGTGGAGTTGCTTTTGAGATATGTTCCTAAAAATACATCTGATGAACTAAGACCCGAAGTCAAGGCACTAGGTGATGGAGAGACTCTAAGCTTCTTGTTTAGACCGAATGCTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCGGGAAAAGATGGTTCTGAGGATGTACTGGATGCTCTTACTAATGATCCTAGCATGGTGGGAATTGAAGCATGGAAGAATGCCCGTGACAGCACAGGCTCCACACCTGAAGATTATGCACGATTACGTGGCCATTATACTTACATTCACTTGGTGCAGAGAAAAATTAACAAGAGACAAGTAGCAGCTCATGTGGTAGTCGAGATCCCTAGCAATCAGACAGAGGGCAATACAAACCAGAAGCAGAAGCAAATCGAGTCTCTCACTGGATTTGAGATTGGAAAAGCTGAAGTAAAACGTGGCCATGGGCAGTGTAAACTTTGTGATACTAAAATTTCTTGTAGAACTGCAGTAGGGAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCATAGCAGCAGTCTGTGTTTGTGTTGCTCTCCTGTTCAAAAGCTCACCTGAAGTTCTATACATGTTCCGTCCCTTCAGATGGGAATCATTGGAGTTCGGGACAAGTTAA 3066 0.4269 MEARLGAEGYNFYGVVGGSSDLSSMGKRAREWSLNDWRWDGDLFIASRVNPVPVDSLRVDSLRVGQQFFPIGSGIPVAGGSSNTSSSCSEEGDVENHKRNKEGERKRRVIVLEDDGLNEEAGALSLNLAGRASPVVEREIASWDGMSGKKSKVAGGTSNRAVCQVKDCGADLSRGKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKANHEAVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSDQPTDQDLLTHLLRSLASQNDEQGSKNLSNLLQEQEILLREGDSSRKSEMVSALFSNGSQGSPTVIAQHQTLSMNKRQQEMMHAHDASTVDHQLVSSIKPSISNSPPIYSEVRDSSAQIKMNNFDLNDIYIDSDDGMEDLEILPVSTNIGTSSVDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEPQSRTDRIVFKLFGKEPNEFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWDDLCCDLTSSLSKLLDVSDDTFWRSGWVHFRVQHQMAFIFNGQVVIDTSLPSRSRNYSKIWTVSPIAVPASKRAQFSVKGVNLMRPATRLMCALEGNYLVCEDAHESTDQCSKELDELQCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLELSETAPDIERTGKIKAKSQAMDFIHEMGWLLHRSQLKYRMVHLNSDVDLFPLERFTWLMEFSMDHDWCAVVKKLLNILLDETVNKGDHPTLYQALTEMGLLHRAVRRNSKQLVELLLRYVPKNTSDELRPEVKALGDGETLSFLFRPNAVGPAGLTPLHIAAGKDGSEDVLDALTNDPSMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQRKINKRQVAAHVVVEIPSNQTEGNTNQKQKQIESLTGFEIGKAEVKRGHGQCKLCDTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLEFGTS 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05402 1021 MobiDBLite consensus disorder prediction 229 252 - -
Vivi1g05402 1021 MobiDBLite consensus disorder prediction 426 465 - -
Vivi1g05402 1021 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 78 908 IPR044817 GO:0003677
Vivi1g05402 1021 SUPERFAMILY SBT domain 161 241 IPR036893 GO:0003677|GO:0005634
Vivi1g05402 1021 Gene3D - 716 911 IPR036770 -
Vivi1g05402 1021 Gene3D - 154 224 IPR036893 GO:0003677|GO:0005634
Vivi1g05402 1021 FunFam Squamosa promoter-binding-like protein 14 154 224 - -
Vivi1g05402 1021 SUPERFAMILY Ankyrin repeat 734 904 IPR036770 -
Vivi1g05402 1021 MobiDBLite consensus disorder prediction 79 102 - -
Vivi1g05402 1021 ProSiteProfiles Zinc finger SBP-type profile. 160 237 IPR004333 GO:0003677
Vivi1g05402 1021 Pfam SBP domain 163 236 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05402 Vivi-Chr1 118241300 118248496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05402 1 1021 SBP-box Gene Family AT3G60030 54.581 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi1g05402 SBP 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05402 - - vvo:131643968 1986.46