Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05397 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAGCGTGGGGGTGTTGGATGTGAAGTATTTTCCGAATAAAGGAAGCAATATTCATGAGATCGGTGATGCAGATGCTGTAACGCCTTCGAGTTTCGATCGAGTTCGTGCTTCTGAATCAGTTTCGGCTGAGTTACTTACTACAAAAGAAGATGTAAAGACTGCAGACATAATCTCAGAAGCTGCAGTTCTGCAATTTGTACCCTGCATCCGTTCGGGTAGTTTTTCCGACATTGGGCCACGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGACTTCTCATCTAGGATCACTATATAAATTTCCTAAACCAAGTGCCTTTTACGGGGTGTTCGATGGTCATGGAGGACCTGAAGCAGCAGCTTATATAAGAAAAAATGTTATAAAATTCTTCTTTGAGGATGTCAATTTCCCTCAGACATCTGAAGTTGATAACATATTTTTACAAGACGTAGAGAATTCCCTCAGAAAGGCTTTTCTTTTGGCAGACTCGGCTATGGCTGATGATTGCAGTGTGAACACTTCTTCAGGGACCACAGCTCTTACTGCAATGATATTTGGAAGACTTCTAATGGTGGCTAATGCTGGTGACTGTCGAGCAGTTCTCAGTCGAAAAGGAGAGGCCATTGATATGTCTCAAGATCACCGGCCTATTTATCCATTAGAGCGGAGACGAGTTGAAGAATTGGGCGGCTATGTAGAAGATGGTTACCTAAATGGTGTTTTATCAGTTACCAGAGCATTAGGGGACTGGGACATGAAGTTACCTAGGGGTGTTCCCTCACCATTGATTGCAGAGCCCGAGTTCCGTCAAATGGTTCTAACAGACGACGACGAATTCCTCATCATAGGATGTGATGGCATCTGGGATGTGATGTCAAGCCAGCATGCCGTTAGCCTTGTACGTAAAGGTTTGAGGAGGCACGATGACCCAGATAAGTGCGCCAGGGATCTAGTTATGGAGGCATTACGACTCAATACATTTGACAATCTTACAGTGATCATAATATGTCTCTCTTCCATTGACCATGGGGAGTCAGAGCCATCCCCACCCCCCCAACGGAAACTGAGATGCTGCAGCCTCTCTGCAGAGGCTCTCTGTAGCTTGAGAAATTTGTTGGAAGGAAGTGCGAGCAACTGA 1179 0.4478 MVAEAEVVCQQSVGVLDVKYFPNKGSNIHEIGDADAVTPSSFDRVRASESVSAELLTTKEDVKTADIISEAAVLQFVPCIRSGSFSDIGPRRYMEDEHIRIDDLTSHLGSLYKFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVNFPQTSEVDNIFLQDVENSLRKAFLLADSAMADDCSVNTSSGTTALTAMIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPLERRRVEELGGYVEDGYLNGVLSVTRALGDWDMKLPRGVPSPLIAEPEFRQMVLTDDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPDKCARDLVMEALRLNTFDNLTVIIICLSSIDHGESEPSPPPQRKLRCCSLSAEALCSLRNLLEGSASN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05397 392 FunFam Probable protein phosphatase 2C 22 64 354 - -
Vivi1g05397 392 ProSiteProfiles PPM-type phosphatase domain profile. 81 351 IPR001932 -
Vivi1g05397 392 SMART PP2C_4 71 349 IPR001932 -
Vivi1g05397 392 CDD PP2Cc 80 351 IPR001932 -
Vivi1g05397 392 SUPERFAMILY PP2C-like 74 352 IPR036457 -
Vivi1g05397 392 Gene3D - 66 357 IPR036457 -
Vivi1g05397 392 Pfam Protein phosphatase 2C 91 343 IPR001932 -
Vivi1g05397 392 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Vivi1g05397 392 PANTHER PROTEIN PHOSPHATASE 2C 69 349 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05397 Vivi-Chr1 118205667 118208478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05397 94 388 PP2C-type Phosphatase Gene Family AT3G62260 68.919 4.48e-154 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vivi1g05397 PP2C 1.8e-63 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05397 K14803 - gmx:100819791 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05397 1 118205667 118208478 Vivi1g05397 1 118205667 118208478 ECH