Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05395 ATGATGGCAACAGCGGGTGTAGCACCTGCTTCTGGATTAAGAGATGTGAATGCAAGTTCAGTAATTGCTGCTGATAGGTTACCTGAGGAGATTCTTGGCATGAGGATTAAGGATGACAAGGAAATGGAAGCAAGTGTGGTAGATGGAAGTAGTACTGAAGCAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGTCAGCCAAAGCAGACAATAAGTTACATGGCTGAGCGTGCGGTTGGACAAGGATCATTTGGCATAGTTTTTCAGGCAAAATGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTACAAACAATGCGCCTTTTGGACCACCCTAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGACGAGCTATATCTTAACTTGGTACTTGAGTTTGTTCCTGAGACTGTCCATCGTGTGATCAGACACTATAGCAAAATGAATCAGAGGATGCCATTGATATATGTAAAACTTTATTCTTACCAGATATGTAGAGCACTAGCTTATATACATAACTGTGTTGGAGTGTCTCATAGGGACATAAAACCTCAAAATCTACTGGTCAATCCTCACACCCACCAGCTGAAGCTTTGTGACTTTGGAAGTGCAAAAGTCCTGGTCAAAGGTGAACCAAACATATCTTACATCTGTTCTAGATATTATCGAGCTCCCGAGCTTATCTTTGGCGCAACTGAGTACACCACGGCTATTGACATTTGGTCAGCTGGATGTGTACTTGGGGAACTTTTGCTTGGCCAGCCTCTCTTTCCTGGTGCGAGTGGAGTTGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACCGAGTTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCGCAAGCGTATGCCACCTGAGGCTGTGGATCTCGTCTCAAGACTACTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTGGTTCATCCGTTCTTTGATGAATTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTCATCTTCCTCCTTTATTTAACTTCAAAGCGAATGAGCTTAAGGGAGTGCCTGCCGAAATGCTGGTGAAGCTGATTCCTTCGCATGCAAGAAAGCAATCTGCCTTGTTTGTGTCATAG 1236 0.4304 MMATAGVAPASGLRDVNASSVIAADRLPEEILGMRIKDDKEMEASVVDGSSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEFVPETVHRVIRHYSKMNQRMPLIYVKLYSYQICRALAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLIPSHARKQSALFVS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05395 411 CDD STKc_GSK3 70 362 IPR039192 -
Vivi1g05395 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vivi1g05395 411 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524
Vivi1g05395 411 FunFam Shaggy-related protein kinase kappa 155 403 - -
Vivi1g05395 411 Gene3D Phosphorylase Kinase; domain 1 59 154 - -
Vivi1g05395 411 FunFam Glycogen synthase kinase-3 beta 59 154 - -
Vivi1g05395 411 ProSiteProfiles Protein kinase domain profile. 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05395 411 Pfam Protein kinase domain 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05395 411 SUPERFAMILY Protein kinase-like (PK-like) 74 383 IPR011009 -
Vivi1g05395 411 SMART serkin_6 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05395 411 Gene3D Transferase(Phosphotransferase) domain 1 155 403 - -
Vivi1g05395 411 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 39 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05395 Vivi-Chr1 118174513 118178088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05395 79 366 MAP Kinase Gene Family AT4G01370 36.364 1.82e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vivi1g05395 Pkinase 5.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05395 K27413 - gmx:100788046 772.696